PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g081560.1 | ||||||||
Common Name | MTR_1g081560 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | GeBP | ||||||||
Protein Properties | Length: 376aa MW: 42703.5 Da PI: 4.3919 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 80.4 | 2.7e-25 | 131 | 228 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk...spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifels 92 + qrlw+++Dei lL+G +d+ +++g ++ + fy++v + s++++++qlveK+rrLK+K k+ +k ++ ++sf+ +++q ife+s Medtr1g081560.1 131 QYQRLWTKQDEIELLKGYLDYIKQQGRantTIQSGVASFYDQVIPKFSVEFNRNQLVEKLRRLKRKHKMTLDK-GKEVQISFKIPQEQAIFEIS 223 68*******************999998653444599*************************************.778889************** PP DUF573 93 kkiWg 97 +kiWg Medtr1g081560.1 224 HKIWG 228 ****8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 3.6E-24 | 133 | 228 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 376 aa Download sequence Send to blast |
MLSPLVSWIL STSSSSSSSS EEEEEESLDI NNDDSDNEKF DNDNVEDQMD NVDDDEKDHF 60 LCPYNVDEDQ MDNIPIALAV SDASPVVTVA MAAPADDTNA ATNTATTSAT TTITTRSKRQ 120 YNKKYSDGVK QYQRLWTKQD EIELLKGYLD YIKQQGRANT TIQSGVASFY DQVIPKFSVE 180 FNRNQLVEKL RRLKRKHKMT LDKGKEVQIS FKIPQEQAIF EISHKIWGND TDHDVLDVDD 240 SRPVPESPDL IENIKLKAED VDNCEETDKR AHKRVRLTTD DVNSKNYQSN SDATSLRGFI 300 EETMKSCFSP LLKELLDDVP VEPPGALPML LSTGEVRDEK WLKRRILELE VYLNRLELLQ 360 GQIKARLEEL KSSLD* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g081560.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003591030.2 | 0.0 | probable transcription factor At5g28040 | ||||
TrEMBL | G7I7E5 | 0.0 | G7I7E5_MEDTR; Putative transcription factor GeBP family | ||||
STRING | AES61281 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16305 | 7 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28040.1 | 2e-40 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g081560.1 |
Entrez Gene | 11412061 |
Publications ? help Back to Top | |||
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