PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g081180.1
Common NameMTR_1g081180
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family Trihelix
Protein Properties Length: 558aa    MW: 64373.4 Da    PI: 5.895
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g081180.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix513.8e-16104178285
         trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                      Wt++evlaL+++r++me+++ +       We+vs+k++e g++rs+++Ckek+e+ ++ + +i++++++      +++++ ++l
  Medtr1g081180.1 104 WTNDEVLALLKIRSSMESWFPDF-----TWEHVSRKLAEVGYKRSAEKCKEKFEEESRFFNNINHNQNSF----GKNFRFVTEL 178
                      ********************998.....9*********************************99998873....4455565555 PP
2trihelix95.83.9e-30418504186
         trihelix   1 rWtkqevlaLiearremeerlrr..gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      rW+k+evlaLi++r + +++ ++  ++ k+plWe++s+ m e g++rs+k+Ckekwen+nk+++k+k+ ++kr s +s+tcpyf+ l+
  Medtr1g081180.1 418 RWPKDEVLALINLRCNNNNEEKEgnSNNKAPLWERISQGMLELGYKRSAKRCKEKWENINKYFRKTKDANRKR-SLDSRTCPYFHLLT 504
                      8*************988888887225799*******************************************8.9999*******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0071713100157IPR001005SANT/Myb domain
PfamPF138377.6E-13102180No hitNo description
PROSITE profilePS500906.423103155IPR017877Myb-like domain
SMARTSM007171415479IPR001005SANT/Myb domain
CDDcd122036.44E-22417484No hitNo description
PfamPF138373.6E-19417504No hitNo description
PROSITE profilePS500906.829418477IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001158Molecular Functionenhancer sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MYDGVPDQFH QFITPRTSSS SLPLHLPFPL STPNNTFPPF DPYNQQNHPS QHHQLPLQVQ  60
PNLLHPLHPH KDDEDKEQNS TPSMNNFQID RDQRQILPQL IDPWTNDEVL ALLKIRSSME  120
SWFPDFTWEH VSRKLAEVGY KRSAEKCKEK FEEESRFFNN INHNQNSFGK NFRFVTELEE  180
VYQGGGGENN KNLVEAEKQN EVQDKMDPHE EDSRMDDVLV SKKSEEEVVE KGTTNDEKKR  240
KRSGDDRFEV FKGFCESVVK KMMDQQEEMH NKLIEDMVKR DEEKFSREEA WKKQEMEKMN  300
KELELMAHEQ AIAGDRQAHI IQFLNKFSTS ANSSSLTSMS TQLQAYLATL TSNSSSSTLH  360
SQNPNPETLK KTLQPIPENP SSTLPSSSTT LVAQPRNNNP ISSYSLISSG ERDDIGRRWP  420
KDEVLALINL RCNNNNEEKE GNSNNKAPLW ERISQGMLEL GYKRSAKRCK EKWENINKYF  480
RKTKDANRKR SLDSRTCPYF HLLTNLYNQG KLVLQSDQKQ ESNNVNVPEE NVVQEKAKQD  540
ENQDGAGESS QVGPPSW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1237242KKRKRS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00011PBMTransfer from AT5G28300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g081180.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1355650.0AC135565.18 Medicago truncatula clone mth2-19b12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003591003.10.0trihelix transcription factor GTL2
TrEMBLG7I6V90.0G7I6V9_MEDTR; Putative transcription factor MYB family
STRINGAES612540.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50433355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.15e-81Trihelix family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]