PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g080920.1
Common NameMTR_1g080920
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bZIP
Protein Properties Length: 413aa    MW: 44288.2 Da    PI: 5.977
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g080920.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_153.17e-17208262357
                      XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 
                      ++kr rr+ +NRe+ArrsR+RK+a + eLe+ v +L +eN++L k+l   ++++ 
  Medtr1g080920.1 208 DVKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRGENSTLVKRLTDVNQKYT 262
                      579*****************************************99988887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.9E-13205260No hitNo description
SMARTSM003381.7E-20206270IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.473208260IPR004827Basic-leucine zipper domain
PfamPF001702.4E-15209261IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.74E-12210261No hitNo description
CDDcd147025.67E-7211261No hitNo description
PROSITE patternPS000360213228IPR004827Basic-leucine zipper domain
PfamPF124985.0E-43277399IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MDRVFSVDEI PDHLWSPQIH VSGSAGDESS KMSRSASEWA FQRFLQEAAS PSPSSSSVAD  60
NTGFADAAAK DGAVLPNGPP PVAVDSDEYR AFLKSKLNLA CAAVAMTRGS LTKSQDLATF  120
PENGPQSSNA TQVGSQPISE GSGPSGNDPP ILQDKDAKVP PAVPSIPHVQ KKTIVAIRPS  180
TSGSSREQSD DDEAEGETYM IDSTDPTDVK RVRRMLSNRE SARRSRRRKQ AHLTELETQV  240
SQLRGENSTL VKRLTDVNQK YTDSAVDNRV LKADVETLRA KVKMAEETVK RVTGLNPLFH  300
VMPDMSSMPA FDGSPSDNLA DAAVPVQDDP HHHFYQPTSI NPMPCHDMRV SNGLGEISSI  360
ENVQPNNAAV VGGNKMGQTA PPLHRVASLE HLQKRIRGGG VDSCGPPSNG EQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1222229RRSRRRKQ
2224229SRRRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.134960.0leaf| root| stem
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00040PBMTransfer from AT5G28770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g080920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013468984.10.0light-inducible protein CPRF2
SwissprotQ990901e-116CPRF2_PETCR; Light-inducible protein CPRF2
TrEMBLA0A072VN130.0A0A072VN13_MEDTR; Putative transcription factor bZIP family
STRINGXP_004495799.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41763358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.25e-78bZIP family protein
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]