PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Medtr1g079630.1 | ||||||||
Common Name | MTR_1g079630 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 149aa MW: 16675.8 Da PI: 6.6841 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 26.5 | 1.6e-08 | 22 | 44 | 1 | 24 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpse 24 + ykGVr++ +g+WvAeIr+p+ Medtr1g079630.1 22 CNYKGVRQRT-WGKWVAEIREPKP 44 56*****999.**********965 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.77E-16 | 22 | 66 | No hit | No description |
SuperFamily | SSF54171 | 6.08E-9 | 23 | 64 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 10.731 | 23 | 107 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.3E-9 | 23 | 43 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.0E-13 | 23 | 70 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 149 aa Download sequence Send to blast |
MMKKESKKLR SRRKGGPENA LCNYKGVRQR TWGKWVAEIR EPKPLAYDNA SKRLYGESAR 60 LNLAPSQSST TTSIGIDPTQ STAPKCIEEN SNNNNNNKGV LVETNLDLEL QSLPWNTSDF 120 VMDDFMELND TLLAQGLKDW DPSSLLEI* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Medtr1g079630.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC146559 | 1e-177 | AC146559.29 Medicago truncatula clone mth2-12e5, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | G7I659 | 1e-104 | G7I659_MEDTR; AP2 domain class transcription factor | ||||
STRING | AES61166 | 1e-105 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1175 | 34 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G40350.1 | 2e-20 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Medtr1g079630.1 |
Entrez Gene | 11435109 |
Publications ? help Back to Top | |||
---|---|---|---|
|