PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g078270.1
Common NameMTR_1g078270
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C3H
Protein Properties Length: 109aa    MW: 12556.8 Da    PI: 4.1948
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g078270.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH361.2e-1180105126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      ++++ C+++ rtG C++G++C+F+H 
  Medtr1g078270.1  80 PGEPDCSYYIRTGLCRFGATCRFNHA 105
                      5799*********************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003567.1E-479106IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.43280107IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-881105IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.55E-684106IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.9E-585105IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
MIYRNKKQNY DPINFETLED DDFDRVPEDS PPFLTIEELE VLHYDLVYAT ESFGFVWFGH  60
AVQSVTHGET IDSESYPQHP GEPDCSYYIR TGLCRFGATC RFNHAPDI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g078270.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A072VNG78e-76A0A072VNG7_MEDTR; Zinc finger C-x8-C-x5-C-x3-H type family protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.12e-17zinc finger protein 1
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]