PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g077730.1 | ||||||||
Common Name | MTR_1g077730 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | C2H2 | ||||||||
Protein Properties | Length: 195aa MW: 21294.6 Da PI: 9.1633 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.9 | 0.00032 | 44 | 66 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ C+k+F++ L H ++H Medtr1g077730.1 44 YACKTCKKTFTSFQALGGHRKVH 66 89**************9999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 1.3E-10 | 43 | 68 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.16E-9 | 43 | 66 | No hit | No description |
PROSITE profile | PS50157 | 11.302 | 44 | 71 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.044 | 44 | 66 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 8.0E-4 | 44 | 67 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 46 | 66 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.16E-9 | 126 | 153 | No hit | No description |
Pfam | PF13912 | 2.9E-8 | 130 | 155 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.473 | 131 | 158 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1.2 | 131 | 154 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 133 | 154 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MEASHEQQLS LGSREQQSPI PFSINIAYSS TEGGTRESAR YNVYACKTCK KTFTSFQALG 60 GHRKVHKKPR YDRQVQEFQF KTNNKSISLK LNSINGMGNI YASSSSSSNN TSTTTTTNNN 120 SNTNNNKTKV YGCSICGSKF TSGQALGGHM TFHHAPVETT SSTPMALQPD EEDEEPPRKK 180 MNVSLDLDLN LPAA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g077730.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC139852 | 9e-33 | AC139852.18 Medicago truncatula clone mth2-8n13, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013468858.1 | 1e-144 | zinc finger protein ZAT5 | ||||
TrEMBL | A0A072VXX0 | 1e-142 | A0A072VXX0_MEDTR; C2H2-type zinc finger protein | ||||
STRING | XP_007144239.1 | 4e-37 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04390.1 | 3e-23 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g077730.1 |
Entrez Gene | 25484557 |
Publications ? help Back to Top | |||
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