PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g077640.1
Common NameMTR_1g077640
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 768aa    MW: 86211.1 Da    PI: 4.5829
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g077640.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.50.000575836191354
                      HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      R++i +++ eLr ++P+      +K s  + L ++++Y+  L
  Medtr1g077640.1 583 RQQIQDCLKELRGIIPHG-----GKCSIDSLLDRTIRYMLFL 619
                      89***************8.....7888888999999999877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.0E-1154136IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088810.582570619IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-5583625IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048733.05E-4686729No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 768 aa     Download sequence    Send to blast
MEMAMSFSLR NKLKTLCAYG DGWSYAIFWR FHQRNPMLLN VEETYYEEQL GEEITKIVPQ  60
VHLLGEGIVG EAAFTGKHSW LHSVSSEDDS GLYQQLSSGI IKTIVAIPVN ACGVVLFGSR  120
NKILETTDFL DQTQSLLKEI NGIDMIDGSG NEVLSMDFTN DDLNGLLASI SSKNSCDWNL  180
KYAHEENHKD LREVFSSFEE GITSVEFDSS SFNDQFKDTI EAFLQPNSSM NNLISKSTSL  240
FGEKSCFESL EQQFVSEIMA QEVADVSTSF ASSIVQDTEL TSLQNMDRVS FQDKHSSQSD  300
VVIEVDLPSS SKTLLQGISN TLELVDMSEE FLKFSSMDDL CQWFAPSSED TSICRKMIQL  360
DNTLSESIEF NPDCTDLGLA EKETSVVIHN SENGFLDSTE FDLGCDQGSE WWGNLLTPVV  420
SADTDNTGFS ECISELNTGT PTDNTRKRLF SELGIEELLR GEAIYNNPFN SSNFENELLS  480
SNKKQMVELS PLNQTQVHFA NLDGTETRPN LMHSVSDLDK SNSVITRKDT LPKLQVGMLV  540
NDRNSINLKR AVPVHPRKLD EPAKPNKKKA KPGESTRPRP KDRQQIQDCL KELRGIIPHG  600
GKCSIDSLLD RTIRYMLFLR GVIKYADILQ EPNETKLIEQ ANEVVPKDSN VAHNKNHGAT  660
WAYEVKNQTM VCPIIVEDMK SPGQMLIEIL CEDQGFFLEI VDIIRGFGLN ILKAKMETRK  720
KKLWAHFIVE ANRHVTRIDV FWSLINLLQQ PNTAAIDSSN KHCNTIN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g077640.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013468851.10.0transcription factor EMB1444
TrEMBLA0A072VNC60.0A0A072VNC6_MEDTR; BHLH transcription factor-like protein
STRINGGLYMA20G35921.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69551621
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.17e-40conserved peptide upstream open reading frame 7
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]