PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g077600.2 | ||||||||
Common Name | MTR_1g077600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | Dof | ||||||||
Protein Properties | Length: 292aa MW: 32289 Da PI: 7.4403 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 120.3 | 6.9e-38 | 39 | 99 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 k++a++cprC+s ntkfCyynnysl+qPryfCk+CrryWt+GG++rn+PvGgg+rkn+k++ Medtr1g077600.2 39 KQEAINCPRCNSINTKFCYYNNYSLTQPRYFCKTCRRYWTQGGSIRNIPVGGGSRKNNKNR 99 7899*****************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-23 | 31 | 87 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.2E-32 | 41 | 97 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.407 | 43 | 97 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 45 | 81 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MDTTQWPQEI MVKPLIEGNI IATNTCEKPM LERKPKQQKQ EAINCPRCNS INTKFCYYNN 60 YSLTQPRYFC KTCRRYWTQG GSIRNIPVGG GSRKNNKNRS SSSFVSNPSP STKNILDENQ 120 NHKIHHEEGQ DLNLGFPHIS DLVQQNNNTS SSTSSALELL TSGFSSSSRG LHSFMPAQVQ 180 GCGFPLQDFK QVPMNFCLDG IGGSGYASLD HGVQETISEG RVLFPFEDLK HVSSTNNPTI 240 LDLDQNNNKE DQQGYSTGIW TGMLGGEGGG SWFWGVSVAE KYMSALKQVS P* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.26310 | 0.0 | flower |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed at preprocambial stages first in wide domains, and later confined to sites of vein development. {ECO:0000269|PubMed:20563990}. | |||||
Uniprot | TISSUE SPECIFICITY: Accumulates in the stele. {ECO:0000269|PubMed:20563990}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g077600.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB087852 | 1e-54 | AB087852.1 Pisum sativum PsDof7 mRNA for DNA binding with one finger 7 protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013468849.1 | 0.0 | dof zinc finger protein DOF4.6 | ||||
Swissprot | Q8LAP8 | 6e-55 | DOF46_ARATH; Dof zinc finger protein DOF4.6 | ||||
TrEMBL | A0A072VXW2 | 0.0 | A0A072VXW2_MEDTR; Dof-type zinc finger DNA-binding family protein | ||||
STRING | XP_004495498.1 | 5e-96 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF674 | 34 | 137 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24060.1 | 1e-38 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g077600.2 |
Entrez Gene | 25484548 |
Publications ? help Back to Top | |||
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