PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g077390.1
Common NameMTR_1g077390
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family M-type_MADS
Protein Properties Length: 158aa    MW: 18567.4 Da    PI: 9.3899
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g077390.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF421.2e-131048240
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                     +i n+s r+ t+ kR++gi+KK  EL +LCd+ ++ ii 
  Medtr1g077390.1 10 FILNDSARKRTYNKRKKGIIKKVRELTTLCDIPACAIIS 48
                     789********************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.7E-19160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-20180IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.6147IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-7323IPR002100Transcription factor, MADS-box
CDDcd002668.97E-20384No hitNo description
PfamPF003193.3E-131050IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-72338IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-73859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MIRKKVKLAF ILNDSARKRT YNKRKKGIIK KVRELTTLCD IPACAIISNP FDSTTEVWPN  60
MEGAIQVIER YQNAYIKHKK NNVDQESFLL QQITKTREQL EKQREQNNEN ELDIHMVRHL  120
QNQELPDDLT VTDLRDYDKL IEKKMKEIDD KIVALSL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g077390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013468831.11e-112agamous-like MADS-box protein AGL80
TrEMBLA0A072VNB01e-111A0A072VNB0_MEDTR; MADS-box transcription factor family protein
STRINGAES972442e-70(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13237929
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65330.12e-30M-type_MADS family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]