PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Medtr1g077360.1 | ||||||||
Common Name | MTR_1g077360 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 238aa MW: 26647.4 Da PI: 9.9009 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 71.1 | 9.4e-23 | 16 | 64 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+ +n+sn qvtfskRr g++KKA+EL++LC+a +a+i+fs+++k++ + Medtr1g077360.1 16 KKMSNESNLQVTFSKRRSGLFKKASELCTLCGAYIALIVFSPSDKVFSF 64 5689*****************************************9987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 24.978 | 8 | 68 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.1E-33 | 8 | 67 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.18E-36 | 9 | 77 | No hit | No description |
SuperFamily | SSF55455 | 1.12E-27 | 9 | 82 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-19 | 10 | 30 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.3E-24 | 18 | 64 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-19 | 30 | 45 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-19 | 45 | 66 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 238 aa Download sequence Send to blast |
MSSGKKSQGR QKIEMKKMSN ESNLQVTFSK RRSGLFKKAS ELCTLCGAYI ALIVFSPSDK 60 VFSFGHPDVE TIIDRYLSQV PPQNNGIWQF IDAHRSVKLH KLNVMLTQIN DAQGIERKRE 120 NEQSDLRKKK EAQFWWACPI EGMNRVQLQL LKNALLDLKK RIAEHAGMVV NQGTPTQTLP 180 FFVGNDSSSN MPIEHQSNHQ QASIFPAGFF QNPMLQPHLF GFNNIGGDGG HGPSGCY* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 8e-16 | 9 | 82 | 2 | 75 | MEF2 CHIMERA |
6byy_B | 8e-16 | 9 | 82 | 2 | 75 | MEF2 CHIMERA |
6byy_C | 8e-16 | 9 | 82 | 2 | 75 | MEF2 CHIMERA |
6byy_D | 8e-16 | 9 | 82 | 2 | 75 | MEF2 CHIMERA |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Medtr1g077360.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC144481 | 0.0 | AC144481.8 Medicago truncatula clone mth2-35e10, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013468830.1 | 1e-179 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A072VM54 | 1e-177 | A0A072VM54_MEDTR; MADS-box transcription factor family protein | ||||
TrEMBL | A0A396JSG2 | 1e-177 | A0A396JSG2_MEDTR; Putative transcription factor MADS-type1 family | ||||
STRING | AES61073 | 1e-140 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60440.1 | 1e-46 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Medtr1g077360.1 |
Entrez Gene | 25484531 |
Publications ? help Back to Top | |||
---|---|---|---|
|