PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g077020.1
Common NameMTR_1g077020
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ZF-HD
Protein Properties Length: 192aa    MW: 22167.3 Da    PI: 9.1052
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g077020.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer1018.4e-32661359
      ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59
                      v+YkeClkNhAa++Gg+a+DGCgEfmps ge+ t +alkC AC+CHRnFHR+e e+
  Medtr1g077020.1  6 VVKYKECLKNHAATIGGNAIDGCGEFMPS-GENDTLEALKCCACNCHRNFHRKEIES 61
                     689*************************9.8888*******************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257745.0E-22763IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.5E-28759IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015668.3E-30859IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.54958IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.603.2E-25117185IPR009057Homeodomain-like
SuperFamilySSF466899.87E-16121185IPR009057Homeodomain-like
TIGRFAMsTIGR015653.5E-24124181IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MEKKIVVKYK ECLKNHAATI GGNAIDGCGE FMPSGENDTL EALKCCACNC HRNFHRKEIE  60
SDFNSPSQHY ANLSLIPDHN INAPFLAHFS PNNKSESTSP SDQSYYEKDF IKDVENRTEK  120
MILKKRSRTK FSKEQKEKML CFAEKAEWRI QKLEESVVQK FCQEIGIKRR ILKVWMHNNK  180
NTFAKRNLST S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A5e-211231821675ZF-HD homeobox family protein
1wh7_A5e-211251821875ZF-HD homeobox family protein
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Not detected in the meristem prior to exposure to long days (LDs), but after exposure to three LDs, stable accumulation on the flanks of the meristem adjacent to floral primordia, during floral induction. {ECO:0000269|PubMed:22319055}.
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g077020.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1398520.0AC139852.18 Medicago truncatula clone mth2-8n13, complete sequence.
GenBankBT1376270.0BT137627.1 Medicago truncatula clone JCVI-FLMt-1P8 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013468809.11e-142zinc-finger homeodomain protein 4
SwissprotQ9M9S03e-60ZHD4_ARATH; Zinc-finger homeodomain protein 4
TrEMBLG7L6E41e-140G7L6E4_MEDTR; Homeobox domain, ZF-HD class protein
STRINGAES785831e-141(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.21e-62homeobox protein 31
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]