PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g076150.1 | ||||||||
Common Name | MTR_1g076150 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | MYB | ||||||||
Protein Properties | Length: 259aa MW: 29415.1 Da PI: 5.1225 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.8 | 2.2e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W+ eEde+l +++++G g+W++ ++ g+ R++k+c++rw +yl Medtr1g076150.1 14 RGPWSLEEDEILTSYIQKHGHGNWRALPKLAGLLRCGKSCRLRWINYL 61 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 54.2 | 3.4e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T eE+e +++++++lG++ W++Ia++++ gRt++++k+ w+++l Medtr1g076150.1 67 RGNFTNEEEENIIKLHEMLGNR-WSAIAAKLP-GRTDNEIKNVWHTHL 112 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.5E-25 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.785 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.86E-31 | 10 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.96E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.832 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.1E-27 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.3E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.1E-16 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.19E-10 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MVRAPCCEKM GLKRGPWSLE EDEILTSYIQ KHGHGNWRAL PKLAGLLRCG KSCRLRWINY 60 LRPDIKRGNF TNEEEENIIK LHEMLGNRWS AIAAKLPGRT DNEIKNVWHT HLKKKLNQTN 120 SEAKKKAISK PKIKRSDSNS STITQSESAS ACTTSSSDFS SVTVGERKDI KSEDIESMEE 180 TMAVIDESFW SEAAALDETS TDMKSSSLTI SNEMLPLQYP DEILPESHED YNSNMDDGMD 240 FWYDIFIRTG DQIELPEF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-26 | 12 | 117 | 5 | 109 | B-MYB |
1h8a_C | 1e-25 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.15864 | 0.0 | leaf| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Fades out in old roots and leaves. {ECO:0000269|PubMed:24415840}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in imbibed seeds, hypocotyls, cotyledons, roots, seedlings, siliques and flowers. {ECO:0000269|PubMed:24415840}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g076150.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT052266 | 0.0 | BT052266.1 Medicago truncatula clone MTYF9_FA_FB_FC1G-B-23 unknown mRNA. | |||
GenBank | BT140178 | 0.0 | BT140178.1 Medicago truncatula clone JCVI-FLMt-6O6 unknown mRNA. | |||
GenBank | EF468484 | 0.0 | EF468484.1 Medicago truncatula MYB transcription factor MYB50 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013468731.1 | 0.0 | transcription factor MYB13 | ||||
Swissprot | Q9SJX8 | 7e-81 | MYB14_ARATH; Transcription factor MYB14 | ||||
TrEMBL | I3SI81 | 0.0 | I3SI81_MEDTR; Myb-related transcription factor LBM1 | ||||
STRING | XP_004495379.1 | 1e-152 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31180.1 | 9e-78 | myb domain protein 14 |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g076150.1 |
Entrez Gene | 25484449 |
Publications ? help Back to Top | |||
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