PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g075600.1
Common NameMTR_1g075600
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family M-type_MADS
Protein Properties Length: 238aa    MW: 26503.4 Da    PI: 9.4685
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g075600.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF71.19.4e-231664149
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     k+ +n+sn qvtfskRr g++KKA+EL++LC+a +a+i+fs+++k++ +
  Medtr1g075600.1 16 KKMSNESNLQVTFSKRRSGLFKKASELCTLCGAYIALIVFSPSDKVFSF 64
                     5689*****************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.978868IPR002100Transcription factor, MADS-box
SMARTSM004322.1E-33867IPR002100Transcription factor, MADS-box
CDDcd002654.16E-36977No hitNo description
SuperFamilySSF554551.57E-27983IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-191030IPR002100Transcription factor, MADS-box
PfamPF003197.3E-241864IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-193045IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-194566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MSSGKKGQGR QKIEMKKMSN ESNLQVTFSK RRSGLFKKAS ELCTLCGAYI ALIVFSPSDK  60
VFSFGHPDVY TVIDRYLSQV PPQNNRILQF IEAHRGAELR ELNAMLTQIN DALGIKKKRK  120
NELSDLCKKN EAQFWWACPI EGMNKVQLQS LKDALLDLKK RIEEHVGMVV SQGTPTQTLP  180
LFVDNGSSSN MPMEHQPNHQ QASIFPAGFC QNPMLQPHLF GFNNMGGDGG HGPSGFY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-16996295MEF2 CHIMERA
6byy_B2e-16996295MEF2 CHIMERA
6byy_C2e-16996295MEF2 CHIMERA
6byy_D2e-16996295MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g075600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1444810.0AC144481.8 Medicago truncatula clone mth2-35e10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003590822.11e-179agamous-like MADS-box protein AGL62
TrEMBLG7I4T71e-177G7I4T7_MEDTR; MADS-box transcription factor family protein
STRINGAES610731e-178(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-52AGAMOUS-like 62
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]