PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g075570.1 | ||||||||
Common Name | MTR_1g075570 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 165aa MW: 18367.2 Da PI: 8.9918 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 59.5 | 4.2e-19 | 2 | 43 | 4 | 45 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 +n+sn qvtfsk ng++KKA+EL++LC+a +a+i+fs++ k Medtr1g075570.1 2 SNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEK 43 79*************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 5.5E-13 | 1 | 50 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 16.371 | 1 | 44 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.6E-20 | 2 | 44 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 9.29E-16 | 2 | 48 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 8.07E-19 | 2 | 43 | No hit | No description |
PRINTS | PR00404 | 2.9E-5 | 13 | 28 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.9E-5 | 28 | 49 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
MSNESNLQVT FSKHCNGLFK KASELCTLCG AYIALIVFSP SEKIVISQVP PQNSGPMQFI 60 EANRSAKLRE LNAMLTQIND ALDIGKKREN ELSDLRKKNE TQFWWACPIE GMDRVQLQLL 120 KKALLDLKKR IGQHANMVVS QGTPTQTFPF FVGNGSSSNM PIEH* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g075570.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC144481 | 0.0 | AC144481.8 Medicago truncatula clone mth2-35e10, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013468830.1 | 2e-89 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | G7I4T5 | 1e-119 | G7I4T5_MEDTR; MADS-box transcription factor family protein | ||||
STRING | AES61073 | 1e-87 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-28 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g075570.1 |
Entrez Gene | 11429577 |
Publications ? help Back to Top | |||
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