PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g074290.1 | ||||||||
Common Name | MTR_1g074290 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | ERF | ||||||||
Protein Properties | Length: 162aa MW: 17933.1 Da PI: 8.2086 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 43.1 | 1e-13 | 16 | 66 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GV + + +g+++A Irdp+ r ++ ++g f ta+eAa+a+++a+ ++ g Medtr1g074290.1 16 QYRGVLYTP-WGKFAAGIRDPN----RegRKLWIGCFHTADEAARAYDRAAYNMSG 66 69*******.**********83....235***********************9977 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 9.15E-19 | 16 | 75 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.2E-22 | 16 | 80 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.704 | 16 | 74 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.9E-25 | 16 | 76 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.9E-10 | 17 | 28 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.1E-9 | 17 | 66 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.9E-10 | 56 | 76 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MSGSRGGAKN NGGPVQYRGV LYTPWGKFAA GIRDPNREGR KLWIGCFHTA DEAARAYDRA 60 AYNMSGSSAI LNFPNEYNMA SHAGSTSSNN VFKFEYLDLD NWLDLLEVIS SHIFREGNRC 120 ADRLAALGLS VVGAVWLSVL PSDLQHEFYA DRYGMPRFRF P* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-26 | 2 | 98 | 3 | 111 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g074290.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024630809.1 | 8e-58 | ethylene-responsive transcription factor 14 | ||||
Swissprot | Q9LSX0 | 2e-26 | ERF96_ARATH; Ethylene-responsive transcription factor ERF096 | ||||
TrEMBL | A0A072VM82 | 1e-116 | A0A072VM82_MEDTR; AP2 domain class transcription factor | ||||
STRING | Bra027493.1-P | 2e-27 | (Brassica rapa) | ||||
STRING | GLYMA10G00990.1 | 2e-27 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G04370.1 | 5e-20 | Ethylene-responsive element binding factor 14 |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g074290.1 |
Entrez Gene | 25484432 |
Publications ? help Back to Top | |||
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