PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g074280.1
Common NameMTR_1g074280
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 121aa    MW: 13198.5 Da    PI: 6.7906
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g074280.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.23.4e-121666255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                     +y+GV + + +g+++A +rdp+    r  ++ + g f ta+eAa+a+++a+ ++ g
  Medtr1g074280.1 16 QYRGVLYTP-WGKFAAGVRDPN----RegRKLWFGCFNTADEAARAYDRAAYNMSG 66
                     69*******.**********83....235***********************9977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.3E-211680IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-181675IPR016177DNA-binding domain
PfamPF008471.4E-81666IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-241676IPR001471AP2/ERF domain
PROSITE profilePS5103219.481674IPR001471AP2/ERF domain
PRINTSPR003674.6E-101728IPR001471AP2/ERF domain
PRINTSPR003674.6E-105676IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
MSGSRGGAKN NGGHVQYRGV LYTPWGKFAA GVRDPNREGR KLWFGCFNTA DEAARAYDRA  60
AYNMSGSSAI LNFPNEYNMA SHAGSTSSSN VFAFEYLDLD NWLDLLEVVV DHAEKNNRGP  120
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-275983111Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g074280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013468693.14e-85ethylene-responsive transcription factor 14
SwissprotQ9LSX02e-27ERF96_ARATH; Ethylene-responsive transcription factor ERF096
TrEMBLA0A072VXB09e-84A0A072VXB0_MEDTR; Ethylene response factor
STRINGGLYMA10G00990.19e-28(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04370.18e-21Ethylene-responsive element binding factor 14
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Zander M,Thurow C,Gatz C
    TGA Transcription Factors Activate the Salicylic Acid-Suppressible Branch of the Ethylene-Induced Defense Program by Regulating ORA59 Expression.
    Plant Physiol., 2014. 165(4): p. 1671-1683
    [PMID:24989234]