PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g070220.1 | ||||||||
Common Name | MTR_1g070220 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | LBD | ||||||||
Protein Properties | Length: 208aa MW: 22857.1 Da PI: 7.8584 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124.9 | 3.9e-39 | 15 | 115 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C aCk+lrrkC+++C++apyf+ e+ p++fa++hk+FGa nv+k+l +lp ++r+da+ +++yeA+ar+ dPvyG+v++i++lqqq+++l+a+ Medtr1g070220.1 15 PCGACKFLRRKCTSECIFAPYFCCEEgPARFAAIHKVFGAGNVSKMLLNLPVHDRHDAVVAIAYEAQARIIDPVYGCVSHIFALQQQVASLQAQ 108 7*********************877769****************************************************************** PP DUF260 94 lallkee 100 l ++k++ Medtr1g070220.1 109 LMQVKAQ 115 *999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.667 | 14 | 116 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.9E-38 | 15 | 113 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MASANGYSPR SSGCPCGACK FLRRKCTSEC IFAPYFCCEE GPARFAAIHK VFGAGNVSKM 60 LLNLPVHDRH DAVVAIAYEA QARIIDPVYG CVSHIFALQQ QVASLQAQLM QVKAQQIISQ 120 SLEEGTKNLE NQWSGNVVKQ QLINPFCPTN YMNPISPKSS LDSIDFSSCS INDVMTIQCQ 180 SYSNKRMTSY HLGERQETSL GMTGNYH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-37 | 11 | 109 | 7 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-37 | 11 | 109 | 7 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: During lateral root formation, expressed in the lateral root primordia, and the developing, emerged, and mature lateral roots. {ECO:0000269|PubMed:19717544}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots and faintly in shoots. {ECO:0000269|PubMed:12068116}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator (PubMed:19717544, PubMed:22974309). Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19 (PubMed:17259263). Functions in the initiation and emergence of lateral roots, in conjunction with LBD18, downstream of ARF7 and ARF19 (PubMed:19717544, PubMed:23749813). Acts downstream of the auxin influx carriers AUX1 and LAX1 in the regulation of lateral root initiation and development (PubMed:26059335). {ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:19717544, ECO:0000269|PubMed:22974309, ECO:0000269|PubMed:23749813, ECO:0000269|PubMed:26059335}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g070220.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:23749813}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013468532.1 | 1e-156 | LOB domain-containing protein 16 isoform X1 | ||||
Swissprot | Q9SLB7 | 1e-60 | LBD16_ARATH; LOB domain-containing protein 16 | ||||
TrEMBL | A0A072VKM2 | 1e-154 | A0A072VKM2_MEDTR; LOB domain protein | ||||
STRING | GLYMA03G31830.1 | 8e-80 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4509 | 33 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42430.1 | 3e-49 | lateral organ boundaries-domain 16 |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g070220.1 |
Entrez Gene | 25484303 |