PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g067020.1
Common NameMTR_1g067020
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C3H
Protein Properties Length: 362aa    MW: 41000.7 Da    PI: 4.8115
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g067020.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.43.8e-0687111126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      +k +lC ff   G+C  G +CkF+H+
  Medtr1g067020.1  87 PKSVLCEFFKV-GQCAKGFKCKFSHD 111
                      6899***9999.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.9E-586112IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-686111IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.84986113IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-488112IPR000571Zinc finger, CCCH-type
SMARTSM0035610156193IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.756156194IPR000571Zinc finger, CCCH-type
PfamPF165433.7E-18214294IPR032378ZC3H15/TMA46 family, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MPPKQSKADV AKKQKVVEDK TFGLKNKNKS KAVQKYVQNL KSSVQPRTDP KQDAKKKKEE  60
EKAKEKELND LFKIAVSQPK VPPGVDPKSV LCEFFKVGQC AKGFKCKFSH DLNVQRKGEK  120
IDIYSDKRDD DTMEEWDQET LEKVVESKKN EYNQNKPTDI VCKHFLDAVE RKQYGWFWSC  180
PNGGKNCIYR HALPPGYVLK SQMKALLEEE SDKMPIEEEI EKQRSQVKTT TPITTELFYQ  240
WKKKKMDERD ASLAAQQAER AKNDRMSGRE LFLSNASLFV DDAEAYDNYQ REPEPDETEQ  300
NGTGSAANNG PSTSATGGAD DELPDDIDDD DDDELDLDEL NELEASLAKT SIQIKEPGAE  360
A*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.81510.0glandular trichome| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g067020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1389410.0BT138941.1 Medicago truncatula clone JCVI-FLMt-18P5 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013468260.10.0zinc finger CCCH domain-containing protein 11
RefseqXP_024634510.10.0zinc finger CCCH domain-containing protein 11
SwissprotQ0JHZ21e-174C3H11_ORYSJ; Zinc finger CCCH domain-containing protein 11
TrEMBLA0A072VKH30.0A0A072VKH3_MEDTR; Putative transcription factor C3H family
STRINGXP_004497453.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44191113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-158C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]