PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g064430.2
Common NameMTR_1g064430
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ARF
Protein Properties Length: 703aa    MW: 78527.9 Da    PI: 7.2624
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g064430.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.82e-23142243199
                      EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                      f k+lt+sd+++ g +++p+ +ae++        +++ +  +  +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF   + +
  Medtr1g064430.2 142 FAKTLTQSDANNGGGFSVPRYCAETIfprldyAADPPLQ-NILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNQKKLLAGDSIVFL--RAE 232
                      89*****************************95455553.7999*********************************************..448 PP

                      EE..EEEEE-S CS
               B3  89 efelvvkvfrk 99 
                      ++ l+v+++r+
  Medtr1g064430.2 233 NGDLCVGIRRA 243
                      8999****997 PP
2Auxin_resp1081e-35308391183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                      a++ a+++++Fev+Y+Prast+eF+vk+  ve+a++++++ G Rfkmafetedss++++ +G+v+gv+ +dp+ WpnS+Wr+L+
  Medtr1g064430.2 308 AVTLAANRQPFEVIYYPRASTPEFCVKAPLVEAAMQIRWCSGIRFKMAFETEDSSRISWfMGIVSGVQFVDPLLWPNSPWRLLQ 391
                      67899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.09E-29135277IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-35135245IPR015300DNA-binding pseudobarrel domain
CDDcd100171.91E-20141242No hitNo description
PROSITE profilePS5086312.943142244IPR003340B3 DNA binding domain
PfamPF023621.1E-21142243IPR003340B3 DNA binding domain
SMARTSM010196.9E-21142244IPR003340B3 DNA binding domain
PfamPF065072.0E-30308391IPR010525Auxin response factor
PROSITE profilePS5174519.025621702IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    Send to blast
MTFQKFCSES FLKMNIFMDS RDNNNNNNSS EEVERCLDPQ LWHACAGGMV QMPTVNSKVY  60
YFPQGHAEHA CGPVNFMNCP KVPPLIPCKV LSIKYMADPE TDEVYAKLKL VPLSGNGNGN  120
GNDAADYDTV GGNENQDKPV SFAKTLTQSD ANNGGGFSVP RYCAETIFPR LDYAADPPLQ  180
NILAKDVHGE TWKFRHIYRG TPRRHLLTTG WSTFVNQKKL LAGDSIVFLR AENGDLCVGI  240
RRAKKGIGGG HEDPLPLGWN PVGENFPLPW FTQNENQMGR NINNNNGLNS GANMTGREKV  300
RPEAVLQAVT LAANRQPFEV IYYPRASTPE FCVKAPLVEA AMQIRWCSGI RFKMAFETED  360
SSRISWFMGI VSGVQFVDPL LWPNSPWRLL QVKWDEPDLL QNVRRVSPWL VELVANIPSI  420
NLSPFSQPRK KLRLSPHHDF PLDGQISVPS FPSNLLGQSN LFRCLPESTP AGMQGARHAH  480
YGLPISDLHL SKVQAGLFPA GFVPFDHAAK LPSVSNNLMM QKSSMSENVS CLLSMASSTQ  540
SSKKFDDEKK PQLVLFGQKI LTEQQISNDR SSDGNTNKMG NFSDGSGTPH HQQVLQKRSS  600
CESFQWHRDN HEETEASLES TDHCKVFLES EDVGRTIDLS LLGSYDELYR KLADMFGIEK  660
YEKVSRVLYR DISGAVKHIG EEPFSNFTRT ARRLTILMDS SK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A5e-793741251388Auxin response factor 5
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g064430.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013468193.10.0auxin response factor 18 isoform X1
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A072VVW00.0A0A072VVW0_MEDTR; Auxin response factor
STRINGXP_004497510.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]