PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Medtr1g061660.1 | ||||||||
Common Name | MTR_1g061660 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 233aa MW: 27562.1 Da PI: 6.3692 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.9 | 8.2e-19 | 59 | 112 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++t+eq e Le+ F+++ +++ +++ +L+k+lgL+ rq+ +WFqNrRa++k Medtr1g061660.1 59 KKKRLTSEQMESLESSFQEEIKLDPQRKMKLSKELGLQPRQIAIWFQNRRARWK 112 56779************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 119.4 | 1.9e-38 | 58 | 150 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekk+rl++eq+++LE+sF+ee kL+p+rK++l++eLglqprq+a+WFqnrRAR+ktkqlE+ y++L+++++ +++e+++L++ev +L++ lke Medtr1g061660.1 58 EKKKRLTSEQMESLESSFQEEIKLDPQRKMKLSKELGLQPRQIAIWFQNRRARWKTKQLEHLYDSLRHQFEVVSKEKQQLQDEVMKLKAMLKE 150 69**************************************************************************************99986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.55E-19 | 44 | 116 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.459 | 54 | 114 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.2E-17 | 57 | 118 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.59E-15 | 59 | 115 | No hit | No description |
Pfam | PF00046 | 3.3E-16 | 59 | 112 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-20 | 60 | 121 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 3.2E-5 | 85 | 94 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 89 | 112 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.2E-5 | 94 | 110 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.8E-7 | 114 | 148 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0010434 | Biological Process | bract formation | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 233 aa Download sequence Send to blast |
MEWNGNTRSF VPQPESSLSF LYNYNQCSYQ GMMEVKHQDW TDTMFPEMEK MMKYGNQEKK 60 KRLTSEQMES LESSFQEEIK LDPQRKMKLS KELGLQPRQI AIWFQNRRAR WKTKQLEHLY 120 DSLRHQFEVV SKEKQQLQDE VMKLKAMLKE QGNSCGRMQG YYTEMSVEET ETVESTSEAA 180 LRCSNREVKG KIHQQLNIDE GNCSFNLEDY NINNNVPLLP YWPAAVPYNY HP* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 106 | 114 | RRARWKTKQ |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00486 | DAP | Transfer from AT5G03790 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Medtr1g061660.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC139525 | 0.0 | AC139525.3 Medicago truncatula clone mth2-26o22, complete sequence. | |||
GenBank | AC146788 | 0.0 | AC146788.13 Medicago truncatula clone mth2-11a6, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003590399.1 | 1e-175 | putative homeobox-leucine zipper protein ATHB-51 | ||||
Swissprot | Q9LZR0 | 3e-48 | ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51 | ||||
TrEMBL | G7I9C4 | 1e-174 | G7I9C4_MEDTR; Homeobox leucine zipper protein | ||||
STRING | AES60650 | 1e-175 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3394 | 34 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G03790.1 | 3e-49 | homeobox 51 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Medtr1g061660.1 |
Entrez Gene | 11420785 |
Publications ? help Back to Top | |||
---|---|---|---|
|