PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g061640.1
Common NameMTR_1g061640, MtrDRAFT_AC139525g26v2
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family Trihelix
Protein Properties Length: 497aa    MW: 56941.9 Da    PI: 6.9419
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g061640.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix765.9e-24123221186
         trihelix   1 rWtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpy 81 
                      +Wt+ +v++Li a+ +++++ +++             +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++++ +k+ +++++++  +
  Medtr1g061640.1 123 KWTDTMVRLLIMAVYYIGDEAGSEGtdpnkkkssgllQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGtACRVVENQGL 216
                      7**************9988888643356677889999**********************************************55999999999 PP

         trihelix  82 fdqle 86 
                      +d+++
  Medtr1g061640.1 217 LDSMD 221
                      99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.6E-22121246No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MMEANAMFST ITPSGLLGVV DNIPLHQQQQ QQKQQNLPNQ QQQNPHQLHH SQVVSYAPQH  60
HDTDTNQHHH HSMKHGFPPF SSSKNKQQQQ SSQMSDEDEP NFPAEESSGG DPKRKISPWQ  120
RMKWTDTMVR LLIMAVYYIG DEAGSEGTDP NKKKSSGLLQ KKGKWKSVSR AMMEKGFYVS  180
PQQCEDKFND LNKRYKRVND ILGKGTACRV VENQGLLDSM DLSPKMKDEV RKLLNSKHLF  240
FREMCAYHNS CGHGGVATSN VQHQVEGGSG TTTPPQNQPQ QQHQHQHQQQ NQQHCFHSSE  300
NGVGSLGVSR GEGLRMLKIG SGYVEEEDDE DEEDESEDFS DEGEDESGEG CSKGHINDQD  360
EEENDGKPSR KRARKGGFSF PRSSSSTQLV NQMNNEISGV FQDGGKSTWE KKQWIRNRIM  420
QLEEQKIGYE SQAFQLEKQR LKWARYSSKK EREMERAKLE NERRRLENER MVLLIRKKEL  480
ELMHIQQQQQ QQHSST*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g061640.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1395250.0AC139525.3 Medicago truncatula clone mth2-26o22, complete sequence.
GenBankAC1467880.0AC146788.13 Medicago truncatula clone mth2-11a6, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003590397.10.0GATA zinc finger domain-containing protein 10
TrEMBLA7UQU90.0A7UQU9_MEDTR; Homeodomain-like
STRINGAES606480.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48203457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.13e-69sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]