PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g061600.1
Common NameMTR_1g061600, MtrDRAFT_AC139525g31v2
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family Trihelix
Protein Properties Length: 513aa    MW: 56167.6 Da    PI: 6.7623
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g061600.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix60.63.9e-19132219187
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                      +W++  + +L+ea++e+ ++l+rg+l++ +Weev++ +  r +  ++s +qCk+k +nl+kryk ++++++++ + s s++p+f+q+e+
  Medtr1g061600.1 132 EWSDTAIVCLLEAYTEKFTQLNRGNLRGRDWEEVASMVseRCENQSKSVEQCKNKVDNLKKRYKLERHRMNNG-CISASHWPWFKQMEH 219
                      5*************************************666677899*************************8.99999********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138379.5E-20130220No hitNo description
Gene3DG3DSA:3.40.1160.101.7E-70269505IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B33.03271506IPR015963Uridylate kinase, bacteria
SuperFamilySSF536331.11E-57272505IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042543.36E-107274506No hitNo description
PfamPF006967.6E-26275485IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0046939Biological Processnucleotide phosphorylation
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MASCDDDDDF SLLHDDNNHH SHHHHLHQTF APHHHHNHHS HHHFSTASVQ SKHITTSVSA  60
AVADDDGDDT DDYGNPFDDD AGSEKRKDRD RDEICDATTS YGFNNKRSKP VSSGNGGGSA  120
GVGAEYRKDR EEWSDTAIVC LLEAYTEKFT QLNRGNLRGR DWEEVASMVS ERCENQSKSV  180
EQCKNKVDNL KKRYKLERHR MNNGCISASH WPWFKQMEHI VGNSLPAKFA DDDKAIVPAS  240
ISPRQSKRYG VATSSSGGQV NSLKSKALSN LRWRRVVLKI SGSALTGSDT CNIDPKVAML  300
VSNEVAIASR LGVEVAIVVG GRNFFCGDAW VTATGLERCT AYQVGMMATV MNSLLLQSTL  360
EKMGVQTRVQ TSVSMQAFAE PYNRQRAIRH LEKGRVVIFG GIGFGAGNPL FSTDISAALR  420
ASEINAQAVL KGTNVDGVYD CNSRDNNFTF EHISFRELVS RGVTSMDMSA LTFCEENAIP  480
VVVFNLLAPG NISKALCGEQ VGTLIDQTGA IS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A8e-612655051239Uridylate kinase
3ek5_B8e-612655051239Uridylate kinase
3ek5_C8e-612655051239Uridylate kinase
3ek5_D8e-612655051239Uridylate kinase
3ek5_E8e-612655051239Uridylate kinase
3ek5_F8e-612655051239Uridylate kinase
3ek6_A8e-612655051239Uridylate kinase
3ek6_B8e-612655051239Uridylate kinase
3ek6_C8e-612655051239Uridylate kinase
3ek6_D8e-612655051239Uridylate kinase
3ek6_E8e-612655051239Uridylate kinase
3ek6_F8e-612655051239Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g061600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1395250.0AC139525.3 Medicago truncatula clone mth2-26o22, complete sequence.
GenBankAC1467880.0AC146788.13 Medicago truncatula clone mth2-11a6, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003590392.10.0uncharacterized protein LOC11425045
TrEMBLA7UQU80.0A7UQU8_MEDTR; Aspartate/glutamate/uridylate kinase family protein, putative
STRINGAES606430.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40623252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.10.0Trihelix family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]