PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g059880.1 | ||||||||
Common Name | MTR_1g059880 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | FAR1 | ||||||||
Protein Properties | Length: 210aa MW: 23462 Da PI: 8.5835 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 28.6 | 4.5e-09 | 98 | 175 | 8 | 90 |
FAR1 8 kevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +++GF+v +++s + + t+ ++vC ++gk++ ++k +++ + + ++gC k++ + ++ w+++ l+ HnH+l+ Medtr1g059880.1 98 NRAGFTVIIRRSCEG----RNTMLELVCERSGKHKLPSTK--VKHEATGSRKCGCLFKVRGYVVReKNAWKLAILNGVHNHDLS 175 589****99987776....45689************9988..6777788888999888875555459***************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.2E-6 | 98 | 175 | IPR004330 | FAR1 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MVKERDGRER VKDKNAGFFV CGDHVTNVTI VCGGICVYAT LDTVENADDD TGDRKRSVVD 60 SVKVEDPIKV EASVKVEASV KVEKDKEEFL GWVRRQVNRA GFTVIIRRSC EGRNTMLELV 120 CERSGKHKLP STKVKHEATG SRKCGCLFKV RGYVVREKNA WKLAILNGVH NHDLSDLCDL 180 MRLIFVKTAI LPEPTLIARL PSDDPRHSE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g059880.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC135319 | 1e-123 | AC135319.28 Medicago truncatula clone mth2-6g4, complete sequence. | |||
GenBank | AC160013 | 1e-123 | AC160013.22 Medicago truncatula clone mth2-162b23, complete sequence. | |||
GenBank | AC183777 | 1e-123 | AC183777.9 Medicago truncatula clone mth2-67d13, complete sequence. | |||
GenBank | CT010443 | 1e-123 | CT010443.3 M.truncatula DNA sequence from clone MTH2-76G21 on chromosome 3, complete sequence. | |||
GenBank | CU207236 | 1e-123 | CU207236.5 M.truncatula DNA sequence from clone MTH2-56B11 on chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A072VK65 | 1e-150 | A0A072VK65_MEDTR; FAR1 DNA-binding domain protein | ||||
STRING | AES71280 | 8e-63 | (Medicago truncatula) |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g059880.1 |
Entrez Gene | 25483814 |
Publications ? help Back to Top | |||
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