PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g058800.1 | ||||||||
Common Name | MTR_1g058800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | ERF | ||||||||
Protein Properties | Length: 142aa MW: 16293 Da PI: 6.5149 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 44.3 | 4.6e-14 | 23 | 76 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 s y GV++ +rW+A++ +n+ +r f+lg+f+t+e+A +a++aa kk++ge Medtr1g058800.1 23 SNYMGVTRLD-ANRWEARLEK--KNNnRRLIFHLGTFDTEEKASRAYDAAVKKFNGE 76 5699**9888.8******544..355588************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.94E-11 | 23 | 77 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 4.59E-14 | 23 | 77 | No hit | No description |
SMART | SM00380 | 8.5E-6 | 24 | 89 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.5E-9 | 24 | 76 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-11 | 24 | 77 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 13.722 | 24 | 83 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 142 aa Download sequence Send to blast |
MSLGAPLLHI QENFRKPFNS SGSNYMGVTR LDANRWEARL EKKNNNRRLI FHLGTFDTEE 60 KASRAYDAAV KKFNGEDDLD IFQYIESYPT KEQDINHPAL LHQHDDINSS APIVLYNFKN 120 NSVYEVGNDG NRSIADHYMK Q* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g058800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | G7I8L2 | 1e-101 | G7I8L2_MEDTR; AP2 domain class transcription factor | ||||
STRING | AES60598 | 1e-102 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF22650 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67180.1 | 4e-10 | target of early activation tagged (EAT) 3 |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g058800.1 |
Entrez Gene | 11423107 |
Publications ? help Back to Top | |||
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