PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g058350.1
Common NameMTR_1g058350
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family B3
Protein Properties Length: 324aa    MW: 37030.7 Da    PI: 6.828
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g058350.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B31031.6e-32761811100
                      EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                      f+k ltpsdv+k++rlv+pk++ae++      ++ + ++  l++edesg+ W+++++y+++s++yvltkGW+++vk+++L++gD+v+F++++ +
  Medtr1g058350.1  76 FEKPLTPSDVGKLNRLVIPKQYAEKYfplggaDSAECKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVLFERHRVD 169
                      99***************************987666668899************************************************88779 PP

                      EE..EEEEE-SS CS
               B3  89 efelvvkvfrks 100
                      +++l++ ++r+s
  Medtr1g058350.1 170 SQRLFINWRRRS 181
                      999******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.1E-4070184IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.03E-3172184IPR015300DNA-binding pseudobarrel domain
CDDcd100178.20E-2975171No hitNo description
PfamPF023622.0E-2976181IPR003340B3 DNA binding domain
PROSITE profilePS5086314.66376181IPR003340B3 DNA binding domain
SMARTSM010192.7E-2676181IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010073Biological Processmeristem maintenance
GO:0010358Biological Processleaf shaping
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MDLSETSLWW TQQHQQQQPM LLVEPTSWSL HHHQPPWFNS QIHENTPHYN LKNIEDEELD  60
TTTTVVEPED EKESMFEKPL TPSDVGKLNR LVIPKQYAEK YFPLGGADSA ECKGLLLSFE  120
DESGKCWRFR YSYWNSSQSY VLTKGWSRYV KDKRLDAGDV VLFERHRVDS QRLFINWRRR  180
SGDDQSAYVS RGVGHHGKGS DGNGKNEVVN GVGWSRGFYS AHVPYPTHHH QVLPYQHDQC  240
LHAGRGSQSQ NQRTKPVGNS SSSTSSSRVL RLFGVNMECQ PEHDSSTPQC SYDSNNNMPL  300
TQGTIDTYQY HQPSNSNSHP HVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A4e-48711803113B3 domain-containing transcription factor NGA1
5os9_B4e-48711803113B3 domain-containing transcription factor NGA1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.169210.0glandular trichome| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g058350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024634118.10.0B3 domain-containing protein At5g06250
SwissprotQ9FNI35e-64Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBLA0A072VKM70.0A0A072VKM7_MEDTR; B3 DNA-binding domain protein
STRINGXP_004513583.11e-148(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57393452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.25e-61B3 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]