PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g058090.1
Common NameMTR_1g058090
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 92aa    MW: 10337.8 Da    PI: 8.7997
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g058090.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.27e-06729123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     + C+ C+ sFsr   L+ H+r+H
  Medtr1g058090.1  7 HACKFCNLSFSRVNALNGHMRVH 29
                     67*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.81E-7434No hitNo description
SMARTSM003550.0011729IPR015880Zinc finger, C2H2-like
PfamPF139121.4E-6732IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.1E-6733IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.739734IPR007087Zinc finger, C2H2
PROSITE patternPS000280929IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MDHREMHACK FCNLSFSRVN ALNGHMRVHR EEKNKAMKEM ITTLNQHEVK NQKVTNPSPS  60
PSQGGEEIDL ELRLGPTNAT PSTKLNLDLK L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g058090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A072VJI74e-61A0A072VJI7_MEDTR; C2H2-type zinc finger protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29340.18e-06C2H2 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]