PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g057790.2
Common NameMTR_1g057790
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family TALE
Protein Properties Length: 650aa    MW: 71669.6 Da    PI: 6.9487
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g057790.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.41.4e-093664031954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  Medtr1g057790.2 366 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 403
                      554459******************************88 PP
2BELL125.52.1e-40230301172
             BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      erqe+q+kkakL+++l+eV++rY+qy++q+q+vissFe+vag+gsa+ Yt+lAl++iS++FrcLkdai++qi
  Medtr1g057790.2 230 ERQEIQMKKAKLINMLDEVEQRYRQYHNQMQMVISSFEQVAGIGSARTYTALALQTISKQFRCLKDAITGQI 301
                      79*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005744.6E-64156299IPR006563POX domain
PfamPF075262.5E-50161298IPR006563POX domain
PROSITE profilePS5007112.195344407IPR001356Homeobox domain
CDDcd000862.45E-11347407No hitNo description
SMARTSM003895.3E-9347411IPR001356Homeobox domain
SuperFamilySSF466895.56E-17348414IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.3E-29350414IPR009057Homeodomain-like
PfamPF059202.6E-18364403IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009610Biological Processresponse to symbiotic fungus
GO:0009737Biological Processresponse to abscisic acid
GO:0010197Biological Processpolar nucleus fusion
GO:0010201Biological Processresponse to continuous far red light stimulus by the high-irradiance response system
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 650 aa     Download sequence    Send to blast
MATYFHNNSE IQGGSDGLQT LIFMNPSGYI NYSDAPQPPP HAGNLVFLNS AANHPGNTSL  60
HHQQQQSLSH APPQFVGVPL SAEQQSVHAH HDVSALHGFP PRMQYNMWNP ADPNSAAREA  120
TRATQGLSLS LHAQGSGEDT RVPVGGSGSS ASNGVSGIQS VLLSSKYLKA TQELLDEVVN  180
VNGGIKVENV KKSFEKNKVV GESSTAVSGE GGSVGGDGNG KRSTELSTTE RQEIQMKKAK  240
LINMLDEVEQ RYRQYHNQMQ MVISSFEQVA GIGSARTYTA LALQTISKQF RCLKDAITGQ  300
IRAANKSLGE DDSFGGKIEG SRLKYVDHHL RQQRAIQQLG MIHHNAWRPQ RGLPERSVSV  360
LRAWLFEHFL HPYPKDSDKH MLAKQTGLTR SQVSNWFINA RVRLWKPMVE EMYMEEMKDQ  420
ELNGSEDNKS SKNTDEDPSM KTPTPQERVP TSETESKSFN SKQDIPMVSV STPSTSPIGV  480
NVRNNSGFSF TELDGITQAS PKRTRNHEIL QSPNHVKSNE TTANNEQISM KFGDDRQSRD  540
GYCFMGNQTN FIAGFGQYPM EEIGRFDAEQ FAPRFSGNNN GVSLTLGLPH CDTLSGTHQS  600
FMPNQNIQLG RRLDISETNE FGDSSAAFES INMQNPKRFA AQLLPDFVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A5e-16353411563Homeobox protein Meis2
3k2a_B5e-16353411563Homeobox protein Meis2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.129340.0leaf| pod| root| seed| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g057790.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2348800.0AB234880.1 Trifolium pratense mRNA for BEL1-like homeodomain transcription factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013467899.10.0BEL1-like homeodomain protein 1
RefseqXP_024633357.10.0BEL1-like homeodomain protein 1
SwissprotQ9SJ560.0BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLA0A072VK100.0A0A072VK10_MEDTR; BEL1-related homeotic protein
STRINGXP_004497655.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.30.0BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]