PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g053960.2 | ||||||||
Common Name | MTR_1g053960 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | C3H | ||||||||
Protein Properties | Length: 228aa MW: 23746.1 Da PI: 9.7798 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.6 | 1.9e-07 | 31 | 55 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++C+ f Ck+Gd+C+FaHg+ Medtr1g053960.2 31 SRICNKFNSLEGCKFGDKCHFAHGE 55 678888888889***********96 PP | |||||||
2 | zf-CCCH | 36.9 | 6.3e-12 | 195 | 218 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 kt+lC +fa+ G C +G+rC+FaHg Medtr1g053960.2 195 KTKLCENFAK-GSCTFGERCHFAHG 218 8*********.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 1.9E-12 | 27 | 59 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-7 | 28 | 59 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.188 | 28 | 56 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0068 | 30 | 55 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.3E-5 | 30 | 55 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 4.68E-14 | 94 | 168 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 4.5E-15 | 97 | 166 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 5.1E-11 | 97 | 167 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 13.754 | 98 | 162 | IPR004088 | K Homology domain, type 1 |
Pfam | PF00013 | 2.1E-10 | 100 | 163 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 3.99E-14 | 100 | 163 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 2.8E-15 | 192 | 224 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.49E-8 | 193 | 223 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-6 | 193 | 219 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.723 | 193 | 220 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.4E-9 | 195 | 218 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MMNLKPAAPP RNVAAPPPVS NNGSAQHAVK SRICNKFNSL EGCKFGDKCH FAHGEWELGK 60 PFAPSVDDHR LMAPTNVGRM PGRVEAPSGL GGTSFGANST AKISVEASLA GAIIGKGGVH 120 SKQICRQTGV KFSIRDHETD PNLRNIELEG TFDQIAQASN MVKDLLLTLS VSAPPKSTPG 180 APAGGGPAAP GRNIKTKLCE NFAKGSCTFG ERCHFAHGAA ELRKLGV* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.17099 | 0.0 | leaf| root |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00113 | ampDAP | Transfer from AT3G12130 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g053960.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013467665.1 | 1e-166 | zinc finger CCCH domain-containing protein 44 | ||||
Swissprot | Q69XQ3 | 1e-74 | C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44 | ||||
TrEMBL | A0A072VIQ3 | 1e-164 | A0A072VIQ3_MEDTR; Putative transcription factor C3H family | ||||
TrEMBL | A0A072VJA9 | 1e-165 | A0A072VJA9_MEDTR; Zinc finger C-x8-C-x5-C-x3-H type family protein | ||||
STRING | XP_004497899.1 | 1e-131 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12130.1 | 7e-62 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g053960.2 |
Entrez Gene | 25483515 |
Publications ? help Back to Top | |||
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