PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g053960.1
Common NameMTR_1g053960
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C3H
Protein Properties Length: 294aa    MW: 30728 Da    PI: 9.9621
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g053960.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.12.6e-0797121327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                       ++C+ f     Ck+Gd+C+FaHg+
  Medtr1g053960.1  97 SRICNKFNSLEGCKFGDKCHFAHGE 121
                      678888888889***********96 PP
2zf-CCCH36.48.9e-12261284226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      kt+lC +fa+ G C +G+rC+FaHg
  Medtr1g053960.1 261 KTKLCENFAK-GSCTFGERCHFAHG 284
                      8*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.8313058IPR000571Zinc finger, CCCH-type
SMARTSM003560.73057IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-63157IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-73256IPR000571Zinc finger, CCCH-type
PfamPF146080.753555No hitNo description
Gene3DG3DSA:4.10.1000.102.8E-1293125IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-794125IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.18894122IPR000571Zinc finger, CCCH-type
PfamPF006426.1E-596121IPR000571Zinc finger, CCCH-type
SMARTSM003560.006896121IPR000571Zinc finger, CCCH-type
SuperFamilySSF547917.89E-14160234IPR004088K Homology domain, type 1
SMARTSM003225.1E-11163233IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.107.3E-15163232IPR004088K Homology domain, type 1
PROSITE profilePS5008413.754164228IPR004088K Homology domain, type 1
CDDcd001051.04E-13166229No hitNo description
PfamPF000133.4E-10166229IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.104.1E-15258290IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.723259286IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-6259285IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-8259289IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-9261284IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MDARKRGRVD AALNGSVKKT KQEMDSTGVG SKTKPCTKFF SIAGCPFGEG CHFSHHVPGG  60
YNAVAQMMNL KPAAPPRNVA APPPVSNNGS AQHAVKSRIC NKFNSLEGCK FGDKCHFAHG  120
EWELGKPFAP SVDDHRLMAP TNVGRMPGRV EAPSGLGGTS FGANSTAKIS VEASLAGAII  180
GKGGVHSKQI CRQTGVKFSI RDHETDPNLR NIELEGTFDQ IAQASNMVKD LLLTLSVSAP  240
PKSTPGAPAG GGPAAPGRNI KTKLCENFAK GSCTFGERCH FAHGAAELRK LGV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.170990.0leaf| root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g053960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013467665.10.0zinc finger CCCH domain-containing protein 44
SwissprotQ7F8R01e-100C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A072VIQ30.0A0A072VIQ3_MEDTR; Putative transcription factor C3H family
STRINGXP_004497899.11e-172(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.11e-60C3H family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]