PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr1g053835.1

Common Name

MTR_1g053835

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

G2-like

Protein Properties

Length: 428aa MW: 48310.4 Da PI: 6.3752

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr1g053835.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.6	1.1e-31	258	312	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt++LHe+Fve+v++LGG+ekAtPk+il+lm+ +gLt+ hvkSHLQkYR+ Medtr1g053835.1 258 KTRIRWTQDLHEKFVECVNRLGGAEKATPKAILRLMDSDGLTIFHVKSHLQKYRI 312 68****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.667	255	315	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.4E-28	256	313	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.6E-17	256	312	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.5E-23	258	313	IPR006447	Myb domain, plants
Pfam	PF00249	3.5E-8	262	311	IPR001005	SANT/Myb domain
Pfam	PF14379	1.6E-20	342	388	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence Send to blast
MNENKIDYLG SVQQNHILNG DFNSEFGNCS SQYFDMRNAS NIGNFSQPLV MEQSSYIVQS 60 QNQNQGQGKS SSSSSSSTIM RSFESPTSAF YATEICMGFP QYDYQVGNES SNPLLISQFS 120 NKVNDLEFPL YQRENHYLDS TNQSSHNFEL SNLNTLQPIL RSPEKSNRIE CGNFPRENYL 180 SVEQHKFFID DAASVSMSPL IHSNGNQDHK VSCGSYDFPG SQLNFSYQQD KLSPTMSTGN 240 VSTNSGNPAC NGSSVSSKTR IRWTQDLHEK FVECVNRLGG AEKATPKAIL RLMDSDGLTI 300 FHVKSHLQKY RIAKYMPEPA QGKSEKRTHV ENVNLDAKSG LQIREALQLQ LDVQRRLHEQ 360 LEIQRKLQLR IEEQGKQLKM MFDQQQKTNS TCQLNTQNLD NTPNNDTPIS PKDIEVTIFE 420 GSHSQYS*

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence Send to blast

MNENKIDYLG SVQQNHILNG DFNSEFGNCS SQYFDMRNAS NIGNFSQPLV MEQSSYIVQS  60
QNQNQGQGKS SSSSSSSTIM RSFESPTSAF YATEICMGFP QYDYQVGNES SNPLLISQFS  120
NKVNDLEFPL YQRENHYLDS TNQSSHNFEL SNLNTLQPIL RSPEKSNRIE CGNFPRENYL  180
SVEQHKFFID DAASVSMSPL IHSNGNQDHK VSCGSYDFPG SQLNFSYQQD KLSPTMSTGN  240
VSTNSGNPAC NGSSVSSKTR IRWTQDLHEK FVECVNRLGG AEKATPKAIL RLMDSDGLTI  300
FHVKSHLQKY RIAKYMPEPA QGKSEKRTHV ENVNLDAKSG LQIREALQLQ LDVQRRLHEQ  360
LEIQRKLQLR IEEQGKQLKM MFDQQQKTNS TCQLNTQNLD NTPNNDTPIS PKDIEVTIFE  420
GSHSQYS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-23	258	315	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-23	258	315	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	4e-23	258	315	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-23	258	315	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-23	258	315	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-23	258	315	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-23	258	315	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-23	258	315	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-23	258	315	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-23	258	315	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-23	258	315	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-23	258	315	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr1g053835.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT138713	0.0	BT138713.1 Medicago truncatula clone JCVI-FLMt-8G17 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013467656.1	0.0	myb family transcription factor PHL5
TrEMBL	A0A072VJR9	0.0	A0A072VJR9_MEDTR; Myb-like transcription factor family protein
STRING	XP_004497904.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3740	34	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	6e-71	G2-like family protein

Link Out ? help Back to Top
Phytozome	Medtr1g053835.1
Entrez Gene	25483506

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132]