PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g053830.1 | ||||||||
Common Name | MTR_1g053830 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | G2-like | ||||||||
Protein Properties | Length: 100aa MW: 10994.6 Da PI: 9.9753 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 89.5 | 3.1e-28 | 19 | 72 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +r+ Wtp+LH++Fve v++LGG+ekA Pk+il lm+++gLt+ +vkSHL kYR+ Medtr1g053830.1 19 TRITWTPDLHDKFVESVNRLGGAEKALPKAILMLMQLDGLTIFQVKSHLKKYRM 72 79***************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-24 | 16 | 73 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.58E-15 | 17 | 72 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.0E-21 | 18 | 73 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.9E-7 | 22 | 71 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 100 aa Download sequence Send to blast |
MSTTSGNPIT NASSVSSNTR ITWTPDLHDK FVESVNRLGG AEKALPKAIL MLMQLDGLTI 60 FQVKSHLKKY RMAKYMAEPA QGESEKRTNV ENMHLDAKS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 7e-23 | 17 | 75 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 7e-23 | 17 | 75 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 8e-23 | 20 | 75 | 3 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 8e-23 | 20 | 75 | 3 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 8e-23 | 20 | 75 | 3 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 8e-23 | 20 | 75 | 3 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 7e-23 | 17 | 75 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 7e-23 | 17 | 75 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 7e-23 | 17 | 75 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 7e-23 | 17 | 75 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 7e-23 | 17 | 75 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 7e-23 | 17 | 75 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g053830.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013467655.2 | 3e-69 | myb family transcription factor PHL5 | ||||
Swissprot | Q0WVU3 | 5e-29 | PHL5_ARATH; Myb family transcription factor PHL5 | ||||
TrEMBL | A0A072VIP1 | 6e-68 | A0A072VIP1_MEDTR; MYB-like transcription factor family protein | ||||
STRING | GLYMA09G17404.1 | 9e-43 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF17875 | 5 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06800.2 | 5e-32 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g053830.1 |
Entrez Gene | 25483505 |
Publications ? help Back to Top | |||
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