PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g053800.1
Common NameMTR_1g053800
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family G2-like
Protein Properties Length: 321aa    MW: 37206.1 Da    PI: 6.7272
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g053800.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.51.3e-27177231155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      k rlrWt+eL e+F+  v+qLGG+ekA Pk+il++m+v+ Lt++hvkSHLQkYR+
  Medtr1g053800.1 177 KRRLRWTKELNESFIMIVNQLGGPEKAKPKAILKMMGVDVLTISHVKSHLQKYRS 231
                      68****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.056174234IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.0E-26174234IPR009057Homeodomain-like
SuperFamilySSF466895.38E-15175233IPR009057Homeodomain-like
TIGRFAMsTIGR015574.4E-21177231IPR006447Myb domain, plants
PfamPF002496.6E-7179230IPR001005SANT/Myb domain
PfamPF143796.7E-7261307IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MYINHWDYEH QSYEPCSIAN PLEDISAIIH ESNANETYMN FQAQQHHEFD IPIWSNEFSM  60
PTTTDSPFLY CQGCKDNYSE NITKQDQPTT CFKLGSESLM SSSEDSISSC EKCSEFPSCS  120
DKRVLESDFS PDHKSHEISF QKTQWESCTK QDKQSSPCGF DFATSTNSDF KITAKGKRRL  180
RWTKELNESF IMIVNQLGGP EKAKPKAILK MMGVDVLTIS HVKSHLQKYR STLHTHKCLK  240
GISEEVQITD GINELQVKIQ MQIEESRQLQ LEVERSNQRQ FEIQRNLQLV IEQQKKQLKL  300
MLDQQKKITK QEKMIDLKRK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-18176231156Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-18176231156Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-18176231156Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-18176231156Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-18176231156Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-18176231156Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-18176231156Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-18176231156Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g053800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013467654.10.0myb family transcription factor PHL5
TrEMBLA0A072VJ980.0A0A072VJ98_MEDTR; Myb-like DNA-binding domain, shaqkyf class protein
STRINGXP_004493570.12e-71(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF144901016
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.14e-30G2-like family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]