PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g050985.1 | ||||||||
Common Name | MTR_1g050985 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | FAR1 | ||||||||
Protein Properties | Length: 102aa MW: 11406.1 Da PI: 7.0718 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 25.3 | 5.1e-08 | 38 | 73 | 57 | 91 |
FAR1 57 etrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 +t tgC+ ++++++++ gk++v ++e +HnH l+p Medtr1g050985.1 38 STITGCTTRMVISLDRkIGKYKVVDFEAQHNHLLVP 73 6789**********9989**************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.0E-5 | 38 | 73 | IPR004330 | FAR1 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 102 aa Download sequence Send to blast |
MAVESKEIME RDDTNSLLWF TPQPGFTSGP LALPRDFSTI TGCTTRMVIS LDRKIGKYKV 60 VDFEAQHNHL LVPPEYVHMI RSHRHISEAQ ASKIVLGDNL A* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g050985.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC157376 | 4e-86 | AC157376.2 Medicago truncatula chromosome 7 BAC clone mth2-70d8, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024630916.1 | 2e-31 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A072VTM2 | 2e-70 | A0A072VTM2_MEDTR; FAR1 DNA-binding domain protein | ||||
STRING | AES82460 | 2e-26 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15115 | 2 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 3e-08 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g050985.1 |
Entrez Gene | 25483281 |
Publications ? help Back to Top | |||
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