PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g050438.1
Common NameMTR_0728s0020
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C3H
Protein Properties Length: 591aa    MW: 64486 Da    PI: 7.6159
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g050438.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.93.2e-07274293626
                      -SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                      C+ f++ G C++Gd+C +aHg
  Medtr1g050438.1 274 CPEFRK-GACRHGDKCEYAHG 293
                      ******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002041.77E-147150No hitNo description
SuperFamilySSF484034.82E-178161IPR020683Ankyrin repeat-containing domain
SMARTSM002486701041IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.206.6E-1811152IPR020683Ankyrin repeat-containing domain
PfamPF127967.0E-919124IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029719.30658161IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0955888IPR002110Ankyrin repeat
SMARTSM002480.001693125IPR002110Ankyrin repeat
PROSITE profilePS5008811.54193128IPR002110Ankyrin repeat
PROSITE profilePS5010312.784268295IPR000571Zinc finger, CCCH-type
SMARTSM003569.9E-5268294IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-5274293IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-4300332IPR000571Zinc finger, CCCH-type
SMARTSM0035613303326IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    Send to blast
METLAVNIKD SFPSLLVLAS HNDSEGFKLL LEKEGAASIN EAGIWYGRQT GSTEIVLEHK  60
TPLMVAATYG SIDVMKVILL YPDVDVNFTC VANKSTALHY AASGGSANVV DAVRILISAG  120
ANVSCVNSNG NRPVDLIVVP PNMQSLKVIL EKLLLDNASD NISVGDFSIS ASVDSSSSGF  180
LENGMSLPYP PSVSPPSPVV DSKFTENKQY PVDPSFPGIK NSMYASDEFR MFSFKVLRCS  240
RSQSHDWTEC PYVHPGEKAR RRDLRRFSYS CMACPEFRKG ACRHGDKCEY AHGIFECWLH  300
PDQYRTRLCK DRPRCNKKVC FFAHDEKELR PLPSLTGSGV PSPRSSASAF NAMELAAAMN  360
LLVGSPPSVS SFHPSNFSQP MPPSGNGISF QSAAWAQQNV LGSNFQSNRL GSSLRACNTL  420
PEDFNVLSYL DGQQNLMKDL SCFSQPGPSS CRSKALTPSN LEDLFSAEIL SSPRYSDPAM  480
ASVFSPSHKS AATNELKQLQ HMLSPSNINM LSPKNDEHRL LQASFSVPSC GSMSPRRLEQ  540
ISPLSPQMSA LPHREKQQQQ LQSVSSRELG YKIPSSVVGS PTDPWSYLGR *
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g050438.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004510954.10.0zinc finger CCCH domain-containing protein 30-like
SwissprotP937551e-169C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A396JW330.0A0A396JW33_MEDTR; Putative transcription factor C3H family
STRINGXP_004510954.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.11e-165CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]