PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Medtr1g048720.1 | ||||||||
Common Name | MTR_1g048720 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 248aa MW: 28430.6 Da PI: 7.215 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.5 | 4.8e-13 | 66 | 117 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + hn+ Er RR++iN+ ++ Lr+llP + + kKls ++ ++ +YI +Lq Medtr1g048720.1 66 KLVHNASERDRRKKINNLYSSLRSLLPVfD---QMKKLSIPATISRVLKYIPELQ 117 678*************************88...9******************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.827 | 64 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.09E-14 | 65 | 134 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.23E-11 | 65 | 121 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.1E-11 | 65 | 130 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.6E-10 | 66 | 117 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.0E-8 | 70 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010106 | Biological Process | cellular response to iron ion starvation | ||||
GO:0055072 | Biological Process | iron ion homeostasis | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 248 aa Download sequence Send to blast |
MLAISPPMFS TIGWPFEEPL SHNQHQNSFY KDTVDQLFNF HDQVEAEINS TDPSQSTSSD 60 LSMVKKLVHN ASERDRRKKI NNLYSSLRSL LPVFDQMKKL SIPATISRVL KYIPELQNQV 120 EGLIKRKDEI LLRLSPQVEE FILSKESQRK KHSYNSGFVV SISRLNDSEI TIQISCYTVQ 180 KIPLSEILIC LENDGLLLLN VSSSKTFGGR VFYNLHFQVD KTQILESHIL NEKLLSIMEK 240 EGEFLKQ* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Mtr.23521 | 0.0 | flower |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Medtr1g048720.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT145920 | 0.0 | BT145920.1 Medicago truncatula clone JCVI-FLMt-13O14 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013467291.1 | 0.0 | transcription factor ORG2 isoform X3 | ||||
TrEMBL | A0A072VIS7 | 1e-179 | A0A072VIS7_MEDTR; Transcription factor ORG2-like protein | ||||
STRING | XP_004513200.1 | 1e-129 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2402 | 33 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G56970.1 | 2e-55 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Medtr1g048720.1 |
Entrez Gene | 25483184 |
Publications ? help Back to Top | |||
---|---|---|---|
|