PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Medtr1g048610.1 | ||||||||
Common Name | MTR_1g048610 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 232aa MW: 26007.4 Da PI: 10.321 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.9 | 6.8e-20 | 88 | 138 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr++ +g+++AeIrdp + k r++lg+f+ta eAaka+++a+ +++g Medtr1g048610.1 88 HYRGVRRRT-WGKFAAEIRDP---NrKGSRVWLGTFDTAIEAAKAYDKAAFQMRG 138 8*****877.**********9...6566*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.84E-30 | 87 | 146 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.2E-32 | 87 | 146 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.9E-36 | 88 | 152 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.6E-14 | 88 | 138 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.815 | 88 | 146 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-23 | 88 | 148 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 5.6E-10 | 89 | 100 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.6E-10 | 112 | 128 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 232 aa Download sequence Send to blast |
MEQNIEFTFW SSNNLEIQNS ISQSNNMKQT QTHFQIPQTT FSKPPRSSSN LSNRKPSLNI 60 TIPSITKPLP QQNIVKSENT NTKEDNKHYR GVRRRTWGKF AAEIRDPNRK GSRVWLGTFD 120 TAIEAAKAYD KAAFQMRGSK AILNFPLDVA TDSVESSLSN CIKVGKKRQR DEGNCVEINN 180 NNNNIKQVKK EEGVLAAPLT PSCWKGFWDT DVMGTIFSVP PLSPLSPLMG F* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-30 | 87 | 149 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Mtr.11850 | 0.0 | leaf| pod| root| stem |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots. Not expressed in cell culture. {ECO:0000269|PubMed:11440157, ECO:0000269|PubMed:7756828}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00572 | DAP | Transfer from AT5G61600 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Medtr1g048610.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Strongly induced by ethephon (ethylene-releasing compound) in buds and in leaves. Also strongly induced by cycloheximide, mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by a protein kinase cascade, and to be negatively regulated by protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT094806 | 9e-55 | BT094806.1 Soybean clone JCVI-FLGm-6O21 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013467284.1 | 1e-171 | ethylene-responsive transcription factor ERF104 | ||||
Swissprot | Q40478 | 1e-54 | ERF5_TOBAC; Ethylene-responsive transcription factor 5 | ||||
TrEMBL | A0A072VI96 | 1e-170 | A0A072VI96_MEDTR; Ethylene response factor | ||||
STRING | XP_004513203.1 | 1e-102 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1085 | 34 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G51190.1 | 1e-41 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Medtr1g048610.1 |
Entrez Gene | 25483180 |
Publications ? help Back to Top | |||
---|---|---|---|
|