PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g046340.1
Common NameMTR_1g046340
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family B3
Protein Properties Length: 336aa    MW: 39464.7 Da    PI: 5.6452
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g046340.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3521.2e-1611100196
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      ffkv+       s+r+ +p  f++ + +k++  k+ +l+d +g  W vk+  +  +++ ++ +GWk F ++n L+++Df+vF++++++ f  ++
  Medtr1g046340.1  11 FFKVF--LTKKHSDRMLIPTAFVKLMISKQRLLKDFILRDHRGSDWHVKV--CSIGNKLYFDDGWKLFREENSLEDNDFLVFTHIENNVF--KF 98 
                      78888..66677899********8887788899*****************..999999**************************999999..55 PP

                      EE CS
               B3  95 kv 96 
                      k+
  Medtr1g046340.1  99 KI 100
                      55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.5E-196102IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.83E-187102IPR015300DNA-binding pseudobarrel domain
CDDcd100173.04E-159101No hitNo description
PROSITE profilePS5086312.6479104IPR003340B3 DNA binding domain
PfamPF023622.0E-1411100IPR003340B3 DNA binding domain
SMARTSM010191.6E-1211104IPR003340B3 DNA binding domain
SuperFamilySSF1019361.59E-6276333IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.4E-6281333IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508636.611293335IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MTNNAKEYPN FFKVFLTKKH SDRMLIPTAF VKLMISKQRL LKDFILRDHR GSDWHVKVCS  60
IGNKLYFDDG WKLFREENSL EDNDFLVFTH IENNVFKFKI LELSSMCQKM KVMDEEENTN  120
TIEDEEEADG DDDYTMVEEE EDSDDNDDVD EEEDEDVADI IMKEKRNKGA GKGINRSCEH  180
QHGRTFKRWS IGSSSAAPNL EDDEIDAEMY IQPGNPYFYA KHYDYRPNIL NISKNVIKDF  240
CLCFTKHITI VCCHCKDVQS NGIAAYRHIL PQMRTKHIEK RGEVRKWKDG RVFVRGWEDF  300
CRKSKITEND KCLCELVLRN GKSIEMLRVH VVREK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g046340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013467138.11e-128B3 domain-containing protein REM21 isoform X1
RefseqXP_024631064.11e-128B3 domain-containing protein REM21 isoform X1
TrEMBLA0A072VGK80.0A0A072VGK8_MEDTR; Plant-specific B3-DNA-binding domain protein
STRINGXP_004497762.11e-125(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF128521124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.19e-12B3 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]