PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g046320.1
Common NameMTR_1g046320
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family B3
Protein Properties Length: 338aa    MW: 40086 Da    PI: 5.4885
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g046320.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.96.5e-1711100196
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      ffkv+       s r+ +p+ f++   +k +  k+ +l+d++ r W vk   r+ ++++++ +GWk+F ++n L e+Df+vF++++++ f  ++
  Medtr1g046320.1  11 FFKVF--LKEKHSERMLIPNAFMNLVHSKRRVIKDFILRDRRRRDWYVKA--RRIGDEFYFDDGWKKFRQENCLVENDFLVFTHIENNVF--KF 98 
                      88888..666667789*******777666666789***************..********************************999999..55 PP

                      EE CS
               B3  95 kv 96 
                      k+
  Medtr1g046320.1  99 KI 100
                      55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.5E-186102IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.3E-177102IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.979104IPR003340B3 DNA binding domain
CDDcd100173.53E-139101No hitNo description
SMARTSM010191.1E-1011104IPR003340B3 DNA binding domain
PfamPF023622.6E-1411100IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.2E-5274332IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.28E-5276332IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MTNNAKEYPG FFKVFLKEKH SERMLIPNAF MNLVHSKRRV IKDFILRDRR RRDWYVKARR  60
IGDEFYFDDG WKKFRQENCL VENDFLVFTH IENNVFKFKI LELSSMCEKM PVMEDEENNN  120
MMEDEEEEKD SDDVDYDDND DHDAEEGNDS DDDDDDGSEN IRKETQSENV YKENSKSGHQ  180
HCRTCKAWDI GSSSAGSNLE DDEIDAEMYI QPGNPHFIAK HSLYRPNELH FPKNVIKDFC  240
VCFTKYVNLV CCHCKDIKRN EIEAYHHILP QISTRHTEKR GEIRTWKNGR VLVLGWEDFC  300
RKCKITENDR CLCELVMRNG EAIEMIRVHI VRKVNKK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13651KRRVIKDFILRDRRRR
24752DRRRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g046320.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013467138.11e-139B3 domain-containing protein REM21 isoform X1
RefseqXP_024631064.11e-139B3 domain-containing protein REM21 isoform X1
TrEMBLA0A072VIA50.0A0A072VIA5_MEDTR; Plant-specific B3-DNA-binding domain protein
STRINGXP_004497762.11e-127(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF128521124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.12e-11B3 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]