PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g043430.1 | ||||||||
Common Name | MTR_1g043430 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | bHLH | ||||||||
Protein Properties | Length: 247aa MW: 27854.5 Da PI: 5.1154 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.6 | 1.1e-08 | 94 | 141 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rE+ RR+++N++f L +l + + + +K +iL A++ +++L Medtr1g043430.1 94 TKACREKLRREKLNERFCDLSAVLEPG---RPVRTDKPAILDDAIRVLSQL 141 6789**********************8...89*****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.96E-11 | 84 | 155 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.049 | 90 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.41E-6 | 94 | 146 | No hit | No description |
Pfam | PF00010 | 5.6E-6 | 94 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.6E-7 | 96 | 147 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.4E-9 | 97 | 163 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MDSLELLENT DYLDFLGDYS PFIDPSPPTH FLWSNSNPSV STEFDISSNV VACQEENTRK 60 SVSTETDIPS GAVVCQEENT RKRGRTESCY KAGTKACREK LRREKLNERF CDLSAVLEPG 120 RPVRTDKPAI LDDAIRVLSQ LKTEAQELKE SNEKLLEEIK CLKAEKNELR EEKLVLKADK 180 EKIEKQLKSM PVSPAGFMPP PPMAAYQASV NKMAVYPNYG YIPMWHYLPQ SARDTSQDHE 240 LRPPAA* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.4117 | 0.0 | leaf| root| seed |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00102 | PBM | Transfer from AT4G14410 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g043430.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN800447 | 0.0 | JN800447.1 Medicago truncatula basic helix-loop-helix transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003590056.1 | 0.0 | transcription factor bHLH104 | ||||
Swissprot | Q8L467 | 2e-80 | BH104_ARATH; Transcription factor bHLH104 | ||||
TrEMBL | G7I5E7 | 0.0 | G7I5E7_MEDTR; BHLH domain class transcription factor | ||||
STRING | AES60307 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8179 | 25 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14410.1 | 2e-56 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g043430.1 |
Entrez Gene | 11419849 |