PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g035640.1
Common NameMTR_1g035640
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family B3
Protein Properties Length: 466aa    MW: 53647.8 Da    PI: 10.0873
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g035640.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.71.6e-11185273191
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                      ff vl++  +   ++lv+p +f +++ +k e     +l+  +   ++v + +++k+++  +++GWk F +  +L++gD + F +++r+   
  Medtr1g035640.1 185 FFEVLMTQTYAHGHILVIPCNFSRSYLNKFE--GIASLRVGEDTAMKVDIVFNNKRSSKSMSTGWKLFNQKYNLQVGDKCKFVMTQREPLL 273
                      89999999999***************44422..368999999999999999999999999**********************988766653 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.0019995IPR003340B3 DNA binding domain
CDDcd100172.54E-91392No hitNo description
SuperFamilySSF1019369.81E-131495IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-101794IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-13181277IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-14183276IPR015300DNA-binding pseudobarrel domain
CDDcd100172.76E-9184280No hitNo description
PfamPF023627.4E-9185274IPR003340B3 DNA binding domain
PROSITE profilePS508639.446185282IPR003340B3 DNA binding domain
SMARTSM010190.032186282IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MSFQYIPDFH RIILQDKKLR VPKKYVEKYW KGISNPIFLK LPNGVQQKIF WVENNGDIWF  60
QKNWDNFAKS LKYGNLLTFK YIGGSYFKVK IFGVNALEID YSNIKSVDEV VEATKEDKEI  120
VDLTDESEIP KEAQMMTNGK RKMSIDIDTL KQKFPGRNIE DTVKKVKKSS RIEVVNETTN  180
NVNPFFEVLM TQTYAHGHIL VIPCNFSRSY LNKFEGIASL RVGEDTAMKV DIVFNNKRSS  240
KSMSTGWKLF NQKYNLQVGD KCKFVMTQRE PLLFTITITK AIKGPNPKKL QGYKEGISSV  300
DRDFLKRKDT EETCRTLPKV HALQGYKEGI SSGDRDILKR NGTGETYRTL PKVHALQGYK  360
EWTSSCDKNI LQRKDIGETS SWSCPKEHAS HESKGQNVMK HNTFKVLVNS KRPHAPKRFM  420
GRGCREKFVE LKMGDNHESK VEIGNTCLLE RIDEKKYVFK VSIVG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g035640.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A072VHA40.0A0A072VHA4_MEDTR; B3 DNA-binding domain protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11472624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-21B3 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]