PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g035570.1
Common NameMTR_1g035570
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family B3
Protein Properties Length: 407aa    MW: 47273.1 Da    PI: 8.7824
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g035570.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.21.7e-14192287198
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      ff v++++ +++  +l+lp++f +eh ++   + t t++  + rs ev l+y  ++++  l++GWk F +  +L++ D++ F++++r+ f ++v
  Medtr1g035570.1 192 FFEVTMSHTYTNGYLLWLPREFSREHLEN--FNGTATIRVGKERSVEVSLRYYDTKEKSCLGGGWKIFREKYNLQVDDVCKFEMIQRRPFLFTV 283
                      6777778888888899**********655..44478888888888888888888888889*************************999998888 PP

                      EEE- CS
               B3  95 kvfr 98 
                      ++ r
  Medtr1g035570.1 284 TITR 287
                      8876 PP
2B335.81.5e-113183931696
                      EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
               B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                       ++pk+f+++      ++  ++      +sW vk++y  + +++ ++kGW++F k+ +++ gD++++kl+++++f + v++
  Medtr1g035570.1 318 PSVPKEFMKRG-----CHENIVELKMGRKSWFVKVNYYESICGCRFSKGWRKFMKECKVEIGDTCLLKLIDERKFVFDVSI 393
                      57899999544.....222233333456*********999999***************************98998666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.19995IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-101295IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-81795IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-18187288IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-17187287IPR015300DNA-binding pseudobarrel domain
CDDcd100173.97E-13191287No hitNo description
PfamPF023625.4E-12192287IPR003340B3 DNA binding domain
PROSITE profilePS5086310.264192289IPR003340B3 DNA binding domain
SMARTSM010191.0E-7192289IPR003340B3 DNA binding domain
PROSITE profilePS508639.051303397IPR003340B3 DNA binding domain
CDDcd100174.66E-10306393No hitNo description
SuperFamilySSF1019364.51E-11306392IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.2E-11306395IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0048308397IPR003340B3 DNA binding domain
PfamPF023625.2E-9318391IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MSFEHVPDFH RIILQDKKLR VPKIYVEKYW KGISNPIFLK FPNGVQQEIF WAESNGDIWF  60
QKNWESFAKF LKYGYLLTFK FIGGSYFKVK IFGANTLEIN YANIKSVDEG AEDTEEGIES  120
DESSDDEDNE ESDEVSDESS DEVEIPKQAQ RTRNGKRKFS GSNKVSMVKK AKKYPMAQSE  180
AVNERANNEN PFFEVTMSHT YTNGYLLWLP REFSREHLEN FNGTATIRVG KERSVEVSLR  240
YYDTKEKSCL GGGWKIFREK YNLQVDDVCK FEMIQRRPFL FTVTITRAGK EPIPKKLLEG  300
PDVMKPYTFK VLVKNTAPSV PKEFMKRGCH ENIVELKMGR KSWFVKVNYY ESICGCRFSK  360
GWRKFMKECK VEIGDTCLLK LIDERKFVFD VSIAGKNPLA VCSPRY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g035570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024631285.10.0B3 domain-containing transcription factor VRN1
TrEMBLA0A072VFJ70.0A0A072VFJ7_MEDTR; B3 DNA-binding domain protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11472624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-14B3 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]