PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g034210.3
Common NameMTR_1g034210
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family B3
Protein Properties Length: 325aa    MW: 36952.5 Da    PI: 9.2162
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g034210.3genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.31.8e-15998499
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                     +l+ + +l+s++l++p +f+++hg +   s+  tl+ + g +W++ l  +k ++++ + +GW++Fv+   +  g  +vF ++grs+f   +++fr+
  Medtr1g034210.3  9 KLIFPTTLQSKQLRIPDNFLRKHGDQ--LSTVATLTIPGGSVWRLGL--KKVDNSICFVDGWQDFVQRYSIGIGYLLVFIYEGRSNF--IIHIFRT 98
                     566778889999***********987..8999999************..**********************************9999..9999996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100179.84E-18597No hitNo description
Gene3DG3DSA:2.40.330.102.7E-19598IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-21598IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.562699IPR003340B3 DNA binding domain
SMARTSM010195.0E-14799IPR003340B3 DNA binding domain
PfamPF023625.9E-13998IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.3E-5254324IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.22E-6260324IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MPLLPSFHKL IFPTTLQSKQ LRIPDNFLRK HGDQLSTVAT LTIPGGSVWR LGLKKVDNSI  60
CFVDGWQDFV QRYSIGIGYL LVFIYEGRSN FIIHIFRTAE LNYDSTMKSR TEGPFYEAYN  120
YVFEGIEDID SFDFLDSAPS NPTGALQGKD STGCMDQLIP ADNHIQKRQE NKDTKKTSRK  180
KRGSRKSDPS AQEASTENDE EAERKRDTKK TSRKKRKSDL SAQEASTENV AYESASARVR  240
HNVSDEERER AMNEANAFEP TNPYCRVSLR PSYLYRGCIM YLPTKFRANL KGVSGFIPLQ  300
TSDGEKQWRV RCLDNEGRIK LSQG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A7e-3223232417107B3 domain-containing transcription factor VRN1
4i1k_B7e-3223232417107B3 domain-containing transcription factor VRN1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g034210.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013466716.10.0B3 domain-containing transcription factor VRN1 isoform X2
TrEMBLA0A072VGN20.0A0A072VGN2_MEDTR; B3 domain transcription factor VRN1-like protein
STRINGXP_004498177.11e-123(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.15e-64B3 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]