PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g028560.1 | ||||||||
Common Name | MTR_1g028560 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | ERF | ||||||||
Protein Properties | Length: 348aa MW: 39629.7 Da PI: 4.7855 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.1 | 2.2e-18 | 114 | 163 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +g+W+AeIrdp g + r +lg+f taeeAa ++aa+ k++g Medtr1g028560.1 114 KYRGVRMRP-WGKWAAEIRDP---GSKVRLWLGTFSTAEEAAMVYDAAAIKFRG 163 8********.**********8...435************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.5E-30 | 113 | 171 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.43E-22 | 114 | 171 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.7E-11 | 114 | 163 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.3E-40 | 114 | 177 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.19E-34 | 114 | 171 | No hit | No description |
PROSITE profile | PS51032 | 24.289 | 114 | 171 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-10 | 115 | 126 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-10 | 137 | 153 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MEYSILCKTT VHESVTKMKY TKPKKHTNNN NKKSIQIPSV IRVTYTDPDA TDSSSDEESN 60 FIIPRRRIKR YVNQMEIETV ASTTVSGNKR KSFRRMKPSH RPAKVSAITG YERKYRGVRM 120 RPWGKWAAEI RDPGSKVRLW LGTFSTAEEA AMVYDAAAIK FRGKDAVLNF APPLPKNVVK 180 AEVVKEKMKV SAVKTEVSGS GEDSGDEFIN LSSPTSVLRF RNEEIGEPVK IVEPVNENED 240 EPVEVEPFGE CEGETRFFDE TNDIFRQDMD EVFNFPTTCD YSLMFDEDPM LFFDETTTVL 300 VDECRLSDHV EFDKTHLPSS SSSLCQQQQE DDFLEDILLD LEPLVML* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-20 | 113 | 170 | 1 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 1e-20 | 113 | 177 | 4 | 67 | ATERF1 |
3gcc_A | 1e-20 | 113 | 177 | 4 | 67 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g028560.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013466377.1 | 0.0 | ethylene-responsive transcription factor CRF3 | ||||
TrEMBL | A0A072VG81 | 0.0 | A0A072VG81_MEDTR; AP2 domain class transcription factor | ||||
STRING | XP_004498391.1 | 1e-132 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF450 | 34 | 161 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 5e-38 | cytokinin response factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g028560.1 |
Entrez Gene | 25482372 |
Publications ? help Back to Top | |||
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