PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g028560.1
Common NameMTR_1g028560
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 348aa    MW: 39629.7 Da    PI: 4.7855
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g028560.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.2e-18114163255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr ++ +g+W+AeIrdp   g + r +lg+f taeeAa  ++aa+ k++g
  Medtr1g028560.1 114 KYRGVRMRP-WGKWAAEIRDP---GSKVRLWLGTFSTAEEAAMVYDAAAIKFRG 163
                      8********.**********8...435************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.5E-30113171IPR001471AP2/ERF domain
SuperFamilySSF541715.43E-22114171IPR016177DNA-binding domain
PfamPF008473.7E-11114163IPR001471AP2/ERF domain
SMARTSM003809.3E-40114177IPR001471AP2/ERF domain
CDDcd000184.19E-34114171No hitNo description
PROSITE profilePS5103224.289114171IPR001471AP2/ERF domain
PRINTSPR003672.9E-10115126IPR001471AP2/ERF domain
PRINTSPR003672.9E-10137153IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MEYSILCKTT VHESVTKMKY TKPKKHTNNN NKKSIQIPSV IRVTYTDPDA TDSSSDEESN  60
FIIPRRRIKR YVNQMEIETV ASTTVSGNKR KSFRRMKPSH RPAKVSAITG YERKYRGVRM  120
RPWGKWAAEI RDPGSKVRLW LGTFSTAEEA AMVYDAAAIK FRGKDAVLNF APPLPKNVVK  180
AEVVKEKMKV SAVKTEVSGS GEDSGDEFIN LSSPTSVLRF RNEEIGEPVK IVEPVNENED  240
EPVEVEPFGE CEGETRFFDE TNDIFRQDMD EVFNFPTTCD YSLMFDEDPM LFFDETTTVL  300
VDECRLSDHV EFDKTHLPSS SSSLCQQQQE DDFLEDILLD LEPLVML*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-20113170159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-20113177467ATERF1
3gcc_A1e-20113177467ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g028560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013466377.10.0ethylene-responsive transcription factor CRF3
TrEMBLA0A072VG810.0A0A072VG81_MEDTR; AP2 domain class transcription factor
STRINGXP_004498391.11e-132(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.15e-38cytokinin response factor 4
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]