PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g023660.2 | ||||||||
Common Name | MTR_1g023660 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 341aa MW: 37929.9 Da PI: 9.6544 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 403.7 | 2.4e-123 | 1 | 340 | 1 | 301 |
GAGA_bind 1 mdddgsrernkg.yye.........paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllal 84 mdd ++ r+k+ +y+ + ++ ++ +q+ms++aerda+i+ernlalsekkaa+aerdmaflqrd+a+aern+al+erdn++++l Medtr1g023660.2 1 MDDR-ENGRHKAdQYKsaqgqwlmqQ-HQHQHPSMKQIMSIMAERDAAIQERNLALSEKKAALAERDMAFLQRDTAIAERNNALMERDNAIATL 92 6666.345999999998888888741.333334456********************************************************** PP GAGA_bind 85 llvensla....salpvgvqvlsgtksidslqq.lse.pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkkse 172 +++en+la s++p+g+q+++g+k+i++l q +++ p+++ds++++re ++++alp aa+++ e+ k+ +rak+pke+k+++++kk++ Medtr1g023660.2 93 QFRENALAnggmSSCPPGCQISRGVKHIHHLPQqVNHlPNMGDSSYGTRELHTTDALP---AAPVSLEVGKPP--RRAKRPKESKSDSPNKKTP 181 ******9999999*****************98757778******************99...788999999998..8899999999999999888 PP GAGA_bind 173 kskkkvkkesader...............................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCC 235 ks +kvkke++d + ska++k +dl+ln+v++D+st+P+P+CsCtG+lrqCYkWGnGGWqSaCC Medtr1g023660.2 182 KS-RKVKKEGDDLNktmfannkelewksseeiingdddlnkqlaiSKADWKPQDLALNQVAYDDSTMPAPACSCTGVLRQCYKWGNGGWQSACC 274 77.788888888445899999************************************************************************* PP GAGA_bind 236 tttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 ttt+SvyPLP+++++r+aR++grKmS++af+klL++LaaeG+dls+pvDLkdhWAkHGtn+++ti+ Medtr1g023660.2 275 TTTLSVYPLPAVPNKRHARVGGRKMSGSAFNKLLSRLAAEGHDLSHPVDLKDHWAKHGTNRYITIK 340 *****************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF06217 | 9.8E-100 | 1 | 340 | IPR010409 | GAGA-binding transcriptional activator |
SMART | SM01226 | 1.7E-162 | 1 | 340 | IPR010409 | GAGA-binding transcriptional activator |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MDDRENGRHK ADQYKSAQGQ WLMQQHQHQH PSMKQIMSIM AERDAAIQER NLALSEKKAA 60 LAERDMAFLQ RDTAIAERNN ALMERDNAIA TLQFRENALA NGGMSSCPPG CQISRGVKHI 120 HHLPQQVNHL PNMGDSSYGT RELHTTDALP AAPVSLEVGK PPRRAKRPKE SKSDSPNKKT 180 PKSRKVKKEG DDLNKTMFAN NKELEWKSSE EIINGDDDLN KQLAISKADW KPQDLALNQV 240 AYDDSTMPAP ACSCTGVLRQ CYKWGNGGWQ SACCTTTLSV YPLPAVPNKR HARVGGRKMS 300 GSAFNKLLSR LAAEGHDLSH PVDLKDHWAK HGTNRYITIK * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.11941 | 0.0 | leaf| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in ovule at the exception of the outer integument. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00540 | DAP | Transfer from AT5G42520 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g023660.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF102094 | 0.0 | EF102094.1 Medicago truncatula GAGA-binding transcriptional activator (BBR/BPC6) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003589387.1 | 0.0 | protein BASIC PENTACYSTEINE6 | ||||
Swissprot | Q8L999 | 1e-149 | BPC6_ARATH; Protein BASIC PENTACYSTEINE6 | ||||
TrEMBL | G7I6G1 | 0.0 | G7I6G1_MEDTR; GAGA-binding transcriptional activator BBR/BPC6-like protein | ||||
STRING | AES59638 | 0.0 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42520.1 | 1e-141 | basic pentacysteine 6 |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g023660.2 |
Entrez Gene | 11428067 |
Publications ? help Back to Top | |||
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