PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g023660.1
Common NameMTR_1g023660
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family BBR-BPC
Protein Properties Length: 341aa    MW: 37929.9 Da    PI: 9.6544
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g023660.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind403.72.4e-12313401301
        GAGA_bind   1 mdddgsrernkg.yye.........paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllal 84 
                      mdd  ++ r+k+ +y+         + ++ ++   +q+ms++aerda+i+ernlalsekkaa+aerdmaflqrd+a+aern+al+erdn++++l
  Medtr1g023660.1   1 MDDR-ENGRHKAdQYKsaqgqwlmqQ-HQHQHPSMKQIMSIMAERDAAIQERNLALSEKKAALAERDMAFLQRDTAIAERNNALMERDNAIATL 92 
                      6666.345999999998888888741.333334456********************************************************** PP

        GAGA_bind  85 llvensla....salpvgvqvlsgtksidslqq.lse.pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkkse 172
                      +++en+la    s++p+g+q+++g+k+i++l q +++ p+++ds++++re ++++alp   aa+++ e+ k+   +rak+pke+k+++++kk++
  Medtr1g023660.1  93 QFRENALAnggmSSCPPGCQISRGVKHIHHLPQqVNHlPNMGDSSYGTRELHTTDALP---AAPVSLEVGKPP--RRAKRPKESKSDSPNKKTP 181
                      ******9999999*****************98757778******************99...788999999998..8899999999999999888 PP

        GAGA_bind 173 kskkkvkkesader...............................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCC 235
                      ks +kvkke++d +                               ska++k +dl+ln+v++D+st+P+P+CsCtG+lrqCYkWGnGGWqSaCC
  Medtr1g023660.1 182 KS-RKVKKEGDDLNktmfannkelewksseeiingdddlnkqlaiSKADWKPQDLALNQVAYDDSTMPAPACSCTGVLRQCYKWGNGGWQSACC 274
                      77.788888888445899999************************************************************************* PP

        GAGA_bind 236 tttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                      ttt+SvyPLP+++++r+aR++grKmS++af+klL++LaaeG+dls+pvDLkdhWAkHGtn+++ti+
  Medtr1g023660.1 275 TTTLSVYPLPAVPNKRHARVGGRKMSGSAFNKLLSRLAAEGHDLSHPVDLKDHWAKHGTNRYITIK 340
                      *****************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062179.8E-1001340IPR010409GAGA-binding transcriptional activator
SMARTSM012261.7E-1621340IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MDDRENGRHK ADQYKSAQGQ WLMQQHQHQH PSMKQIMSIM AERDAAIQER NLALSEKKAA  60
LAERDMAFLQ RDTAIAERNN ALMERDNAIA TLQFRENALA NGGMSSCPPG CQISRGVKHI  120
HHLPQQVNHL PNMGDSSYGT RELHTTDALP AAPVSLEVGK PPRRAKRPKE SKSDSPNKKT  180
PKSRKVKKEG DDLNKTMFAN NKELEWKSSE EIINGDDDLN KQLAISKADW KPQDLALNQV  240
AYDDSTMPAP ACSCTGVLRQ CYKWGNGGWQ SACCTTTLSV YPLPAVPNKR HARVGGRKMS  300
GSAFNKLLSR LAAEGHDLSH PVDLKDHWAK HGTNRYITIK *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.119410.0leaf| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in ovule at the exception of the outer integument. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00540DAPTransfer from AT5G42520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g023660.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1020940.0EF102094.1 Medicago truncatula GAGA-binding transcriptional activator (BBR/BPC6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003589387.10.0protein BASIC PENTACYSTEINE6
SwissprotQ8L9991e-149BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBLG7I6G10.0G7I6G1_MEDTR; GAGA-binding transcriptional activator BBR/BPC6-like protein
STRINGAES596380.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69053449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.11e-141basic pentacysteine 6
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]