PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g023170.1 | ||||||||
Common Name | MTR_1g023170 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | ERF | ||||||||
Protein Properties | Length: 272aa MW: 29790.1 Da PI: 4.6667 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58 | 2.3e-18 | 39 | 88 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ykGVr++ +g+WvAeIr+p + r +r +lg+f t eAa a++aa++kl+g Medtr1g023170.1 39 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFETSHEAALAYDAAARKLYG 88 69****999.**********8...3.35************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.62E-22 | 38 | 98 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.6E-30 | 39 | 97 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.41E-21 | 39 | 96 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.6E-13 | 39 | 88 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-35 | 39 | 102 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.431 | 39 | 96 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-9 | 40 | 51 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-9 | 62 | 78 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MMKSGMGIEE RKQLKRPAQA SSRKGCMRGK GGPENASCTY KGVRQRTWGK WVAEIREPNR 60 GARLWLGTFE TSHEAALAYD AAARKLYGSD AKLNLPELST PPQNTTSSPS PTPPQMQQQQ 120 QHPHIQIQPN NNNNINNSFN ICNNINMNNN NNNSPVFVSL SSQQVGGDIT PIYSSDNSVM 180 SFPLDSNSTI TNTMESKGME ISSDSFFGTV NYETMPVIDD DSIWTEAAMS LDAAISMDFP 240 MIVDDADGIY NSGANFAEVG AWDSLQTPWC M* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 6e-20 | 40 | 96 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00240 | DAP | Transfer from AT1G75490 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g023170.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC159535 | 0.0 | AC159535.12 Medicago truncatula clone mth2-152f22, complete sequence. | |||
GenBank | AC160013 | 0.0 | AC160013.22 Medicago truncatula clone mth2-162b23, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003589344.1 | 0.0 | dehydration-responsive element-binding protein 2D | ||||
Swissprot | Q9LQZ2 | 4e-50 | DRE2D_ARATH; Dehydration-responsive element-binding protein 2D | ||||
TrEMBL | G7I5V5 | 0.0 | G7I5V5_MEDTR; AP2 domain class transcription factor | ||||
STRING | AES59595 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2562 | 33 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75490.1 | 1e-42 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g023170.1 |
Entrez Gene | 11414552 |
Publications ? help Back to Top | |||
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