PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g023050.1
Common NameMTR_1g023050
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family TALE
Protein Properties Length: 628aa    MW: 69859.6 Da    PI: 5.4684
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g023050.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.82.1e-093764131954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yp+ +e+  LA+++gLt +qV +WF N R +
  Medtr1g023050.1 376 FEHflHPYPKDSEKIMLARQTGLTRNQVANWFINARVR 413
                      665559******************************88 PP
2BELL123.87e-40247318172
             BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      erq l  kk+kLls+l+e+dkrY+qy++q+q+v+ssF++vag+g+a+pYt+lAl++iSrhFrcL+dai++qi
  Medtr1g023050.1 247 ERQHLLDKKTKLLSMLDELDKRYRQYCHQMQIVVSSFDMVAGCGAAEPYTALALRTISRHFRCLRDAISGQI 318
                      6889999****************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005749.0E-59164316IPR006563POX domain
PfamPF075261.6E-49172315IPR006563POX domain
PROSITE profilePS5007112.438354417IPR001356Homeobox domain
CDDcd000863.03E-12357418No hitNo description
SMARTSM003891.6E-9357421IPR001356Homeobox domain
SuperFamilySSF466892.27E-17358424IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-28360423IPR009057Homeodomain-like
PfamPF059203.0E-17374413IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 628 aa     Download sequence    Send to blast
MYPNQAFSSG SYAEMISGNT LLPHNYSESV GGQNELKFMT SMDDTMNMLS IDQGHSNATT  60
SDPRTQFGLV ESEQNVQCQG LSLSLGTMMP SFQYQYPGNS FTSLMNAQIS NLKGSASLKD  120
DEAECMASLS SGGFQNNVKR EGLYNPHPSI GLNEGQSDPC LQGSAVIPNN ALNSHYLKAA  180
QELLDEIVNV RKGLKQTGLE KQQSFHDAGL DASKDSDGKS TSQSMQVSSG PNGSNANNSS  240
CELSPAERQH LLDKKTKLLS MLDELDKRYR QYCHQMQIVV SSFDMVAGCG AAEPYTALAL  300
RTISRHFRCL RDAISGQIQL TQRSLGEQEG IPRLRYVDQQ LRQQKALQQL GVMRQAWRPQ  360
RGLPESSVSI LRAWLFEHFL HPYPKDSEKI MLARQTGLTR NQVANWFINA RVRLWKPMVE  420
EMYKEEFGDS ETSSNLLSEN TPKAPRDDDV RVWDDKREES HDKLMNVDGA QQQGQIAGLK  480
LDHASSSTTE LDRGIQSSDH WTNVMDSRIG KMQGDQQRFN MNNSPYSNPP ISINQNGDGC  540
IMDSTPTTYD DLSELNNFGV GGHVSLALEL RNSESDGFGL SNDDINKRRN QAMASSPDTD  600
LLDYHFTDTG KQQHKFANPH LLHEFVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A5e-16363420158Homeobox protein Meis1
4xrs_B5e-16363420158Homeobox protein Meis1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.148740.0leaf| pod| root| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g023050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1595350.0AC159535.12 Medicago truncatula clone mth2-152f22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003589334.10.0BEL1-like homeodomain protein 3
RefseqXP_024631180.10.0BEL1-like homeodomain protein 3
TrEMBLG7I5U50.0G7I5U5_MEDTR; BEL1-related homeotic protein
STRINGAES595850.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21463179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16400.11e-104BEL1-like homeodomain 7
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]