PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g019240.1
Common NameMTR_1g019240
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 268aa    MW: 29402.4 Da    PI: 5.9377
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g019240.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.22.2e-1695141455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       hn  E+rRR++iN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  Medtr1g019240.1  95 FHNLSEKRRRSKINEKLKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 141
                      5*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.5E-2088150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-2088151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.81591140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.02E-1894145No hitNo description
PfamPF000107.1E-1495141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-1897146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010047Biological Processfruit dehiscence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MAGSSDDDIH QTHPSLVPPD SQDFSNIFNQ LMDPSSSSSF NFSDPYPPNP STISYPPPHF  60
TSSSSAQNDE GSELPSSKAA PPPRSSSKRS RAAEFHNLSE KRRRSKINEK LKALQNLIPN  120
SNKTDKASML DEAIEYLKQL QLQVQMLMVR NGYSLHPMSL SGGSRPPTMF PQTELFNLDE  180
GNSGFHNSNN AITPPTNNEY FARQAFSFPE QCSISNQSVI LPSSTNIASF DTSSSFQTSI  240
KDNFCNNMPQ LILDTTRIGK TPSSDVS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g019240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1484861e-161AC148486.17 Medicago truncatula clone mth2-56d23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003589168.20.0transcription factor ALC
TrEMBLG7I3I40.0G7I3I4_MEDTR; Helix loop helix DNA-binding domain protein
STRINGAES594191e-177(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22763379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.16e-25bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]