PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g019120.2
Common NameMTR_1g019120
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C3H
Protein Properties Length: 298aa    MW: 32215.6 Da    PI: 6.5069
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g019120.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.47.9e-06247269426
                      ---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                      ++C ff  +  C+ G++C+F H+
  Medtr1g019120.2 247 KPCIFFNSSRGCRNGANCTFQHD 269
                      58********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.634243271IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4247270IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-5248270IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MRVLEAIYPR ISSIPPNPIS VDVDDSHYID GHIVVIPITP VEDGDVGADT LSPGILDGSN  60
TVTTMSMVSD VAAASVALTS LVKSSEHGNL IDPELLNNIL NNPEVIEKLV RNYNVQNAQY  120
AQNTGSSSNV FSHPPNPFNQ VETTTSSSNA FSSTSSYTHT TGGQMAPTMS TQWHRRPEIS  180
SAIAATPVEV PSTKDVNYYK SLIQQHGGDK QEALPYSSSN RQNQQPLSNY DTVHNFRAKG  240
SKPKISKPCI FFNSSRGCRN GANCTFQHDA SFQPQQGNPS SGMHSSKRMK MDNEISS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.72170.0pod| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g019120.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1344300.0BT134430.1 Medicago truncatula clone JCVI-FLMt-18N16 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003589157.10.0zinc finger CCCH domain-containing protein 6
TrEMBLA0A072VF090.0A0A072VF09_MEDTR; Zinc finger C-x8-C-x5-C-x3-H type family protein, putative
TrEMBLG7I2D90.0G7I2D9_MEDTR; Putative transcription factor C3H family
STRINGAES594080.0(Medicago truncatula)
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]