PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g019110.1 | ||||||||
Common Name | MTR_1g019110 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | ERF | ||||||||
Protein Properties | Length: 181aa MW: 20710.2 Da PI: 9.1355 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.8 | 5.5e-18 | 43 | 92 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r +k +g+WvAeIr+p +kr r++lg++ t+ Aa+a++ a +l+g Medtr1g019110.1 43 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYITPIAAARAYDTAVFYLRG 92 69*****99.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.8E-34 | 43 | 106 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-20 | 43 | 101 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.799 | 43 | 100 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-11 | 44 | 55 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.8E-29 | 44 | 101 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.10E-26 | 44 | 102 | No hit | No description |
Pfam | PF00847 | 1.9E-10 | 44 | 92 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-11 | 82 | 102 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MEEEDREYCC SMNSRTTNSP IAIDHKNNNN NKGMKKEKKA MKPYRGIRMR KWGKWVAEIR 60 EPNKRSRIWL GSYITPIAAA RAYDTAVFYL RGPSANLNFP ELLFKDQQED EENLQQHGNM 120 SADSIRKKAA QVGARVDAIE TNSLINHHHH HHVSSNNHVH SNSTSSLKPD LNEFPKPEDC 180 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-14 | 42 | 100 | 4 | 63 | ATERF1 |
3gcc_A | 1e-14 | 42 | 100 | 4 | 63 | ATERF1 |
5wx9_A | 1e-14 | 44 | 100 | 15 | 72 | Ethylene-responsive transcription factor ERF096 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.8574 | 0.0 | root| seed| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g019110.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC137824 | 0.0 | AC137824.25 Medicago truncatula clone mth2-10l10, complete sequence. | |||
GenBank | AC148486 | 0.0 | AC148486.17 Medicago truncatula clone mth2-56d23, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003589156.2 | 1e-135 | ethylene-responsive transcription factor RAP2-1 | ||||
Swissprot | O22174 | 4e-51 | ERF08_ARATH; Ethylene-responsive transcription factor ERF008 | ||||
TrEMBL | G7I2D8 | 1e-133 | G7I2D8_MEDTR; Dehydration-responsive element-binding protein | ||||
STRING | AES59407 | 1e-132 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1290 | 32 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46768.1 | 2e-46 | related to AP2 1 |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g019110.1 |
Entrez Gene | 11428031 |
Publications ? help Back to Top | |||
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